LOCUS BC045826 1936 bp mRNA linear HUM 18-MAR-2009
DEFINITION Homo sapiens non-protein coding RNA 153, mRNA (cDNA clone MGC:51171
IMAGE:5262165), complete cds.
ACCESSION BC045826
VERSION BC045826.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1936)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1936)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (31-JAN-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 90 Row: n Column: 18
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 32189414
The stop codon of the CDS annotated on this record is located > 55
bases upstream of a splice junction, and therefore the mRNA is
predicted to be subject to nonsense-mediated mRNA decay (NMD).
FEATURES Location/Qualifiers
source 1..1936
/db_xref="H-InvDB:HIT000098245"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:51171 IMAGE:5262165"
/tissue_type="Brain, hippocampus"
/clone_lib="NIH_MGC_95"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..1936
/gene="NCRNA00153"
/gene_synonym="HT013"
/db_xref="GeneID:55857"
/db_xref="HGNC:HGNC:15865"
CDS 167..1879
/gene="NCRNA00153"
/gene_synonym="HT013"
/codon_start=1
/product="NCRNA00153 protein"
/protein_id="AAH45826.1"
/db_xref="GeneID:55857"
/db_xref="HGNC:HGNC:15865"
/translation="MQLEYETQIKKMLCSKDSLGLKEELTDEDREKVAVQEGINSGTA
MSRGLYQPATIFMGRQMSAILSMRDFSTEHKSPQPTKNFSIPDPHSHRQTAQSSNVTD
SCVVQTSNDTQCLNKSDNIDGKASLQIGEKTPVTASVLSEEEQTHCLEIGSNTRHGKS
NLSEGKKSAELNSPLRERLSPENRTTDLKCDSSSGSEGEILTREHIEVEEKRASPPVS
PIPVSEYCESENKWSQEKHSPWEGVSDHLAHREPKSQKPFRKMQEEEEESWSTSSDLT
ISISEDDLILESPEPQPNPGGKMEGEDGIEALKLIHAEQERVALSTEKNCILQTLSSP
DSEKESSTNAPTREPGQTPDSDVPRAQVGQHVATLKEHDNSVKEEATALLRKALTEEC
GRRSAIHSSESSCSLPSILNDNSGIKEAKPAVWLNSVPTREQEVSSGCGDKSKKENVA
ADIPITETEAYQLLKKATLQDNTNQTENRFQKTDASVSHLSGLNIGSGAFETKTANKI
ASEASFSSSEGSPLSRHENKKKPVINLKSNALWDESDDSNSEIEAALRPRNHNTDDSD
DFYD"
BASE COUNT 677 a 403 c 449 g 407 t
ORIGIN
1 gctggcgcag cggcagcagc atgagccgga ccctcgcatc ggccgtgccc ctgtcgagtc
61 ccgactacta cgagaggctg ggccaactcc agcacgggct gcgggacagt gaaaagaaga
121 gattggacct ggaaaagaaa ctttatgaat ataatcagtc tgatacatgc agctcgaata
181 tgagactcaa attaagaaga tgctatgctc aaaagatagc ctgggactaa aagaggaact
241 gacagatgaa gacagagaaa aggttgcagt gcaggagggg attaactcag gaacagccat
301 gtcaagagga ttgtatcaac cagcaacaat ctttatgggc cgccaaatgt cagccatctt
361 aagcatgaga gatttcagta cagagcacaa atctccccag cccacaaaga acttttcaat
421 tcctgaccca cattcacacc gacagacagc ccagagcagt aatgtgacag acagctgtgt
481 agtacaaact agtaatgaca cacagtgctt aaataagtct gacaacatag atggaaaggc
541 atctcttcag attggtgaga aaacgccagt cacagccagt gtattgtctg aggaggaaca
601 aactcattgc ttggagatag gaagtaacac acgtcatggc aagagtaatt tatctgaagg
661 caaaaagtct gctgaactca attccccgtt acgggaaaga ttaagtccag agaacagaac
721 cactgattta aagtgtgaca gttccagcgg atcagaggga gaaatactga cacgggaaca
781 tattgaagtt gaggaaaaaa gagccagccc gccagtctct ccgataccag tttcagaata
841 ctgtgaatct gaaaataagt ggtctcaaga gaagcattct ccttgggaag gtgtttcaga
901 tcatcttgct cacagggaac caaagtcaca aaagcccttc agaaaaatgc aggaagagga
961 ggaggaaagt tggagcacca gcagtgacct taccatttca ataagtgaag atgatctgat
1021 tttagagagc ccagaaccac agccaaatcc aggtggcaag atggagggag aagatggaat
1081 agaggcctta aaattaatcc atgctgagca agaaagagtt gccctatcca ctgaaaaaaa
1141 ttgtattttg caaaccctaa gctctcctga ttcagaaaag gaatcctcca ctaacgcacc
1201 aacaagagaa cctggacaaa caccagactc agacgtaccg agggcacagg tgggtcagca
1261 tgttgccacc ttgaaagaac atgataattc tgtcaaagaa gaggcaacag cattattgag
1321 aaaagccctt acagaagagt gtggccgtag gtcagctatt cacagtagtg aatcatcttg
1381 cagcttgcca tctattctga atgacaatag tggaataaag gaagccaaac ctgctgtatg
1441 gctcaacagt gttcctacaa gggaacaaga agtttcaagt ggctgtggag acaagagcaa
1501 gaaagaaaat gtggctgcag atatcccaat cacagaaaca gaagcctatc agttgctgaa
1561 gaaggccacc cttcaggata atacaaatca aactgaaaac aggtttcaaa agacagatgc
1621 ttctgtgtca cacttgtcag gtttgaatat tggcagcggt gcattcgaga caaagacagc
1681 taacaaaatt gcttcggaag ctagtttttc atctagtgaa ggaagtcctt tgtcaaggca
1741 tgaaaacaaa aagaaacccg tgatcaattt aaaatctaat gccctctggg atgagtctga
1801 tgacagtaac tcagaaattg aggctgcttt acgccccaga aaccataaca ccgatgattc
1861 tgatgatttt tatgactaac gtgctgtgac attggtttca aataaagtct ttaaacaaac
1921 taaaaaaaaa aaaaaa
//