LOCUS BC045659 4748 bp mRNA linear HUM 17-JUL-2006 DEFINITION Homo sapiens potassium voltage-gated channel, Shal-related subfamily, member 1, mRNA (cDNA clone MGC:43677 IMAGE:5271042), complete cds. ACCESSION BC045659 VERSION BC045659.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 4748) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 4748) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (31-JAN-2003) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Miklos Palkovits, M.D., Ph.D. cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki Toshiyuki and Piero Carninci (RIKEN) cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 74 Row: m Column: 11 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 47078279. FEATURES Location/Qualifiers source 1..4748 /db_xref="H-InvDB:HIT000052960" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:43677 IMAGE:5271042" /tissue_type="Testis" /clone_lib="NIH_MGC_97" /lab_host="DH10B" /note="Vector: pBluescriptR" gene 1..4748 /gene="KCND1" /gene_synonym="KV4.1" /db_xref="GeneID:3750" /db_xref="HGNC:HGNC:6237" /db_xref="MIM:300281" CDS 1572..3515 /gene="KCND1" /gene_synonym="KV4.1" /codon_start=1 /product="potassium voltage-gated channel, Shal-related subfamily, member 1" /protein_id="AAH45659.1" /db_xref="GeneID:3750" /db_xref="HGNC:HGNC:6237" /db_xref="MIM:300281" /translation="MAAGLATWLPFARAAAVGWLPLAQQPLPPAPGVKASRGDEVLVV NVSGRRFETWKNTLDRYPDTLLGSSEKEFFYDADSGEYFFDRDPDMFRHVLNFYRTGR LHCPRQECIQAFDEELAFYGLVPELVGDCCLEEYRDRKKENAERLAEDEEAEQAGDGP ALPAGSSLRQRLWRAFENPHTSTAALVFYYVTGFFIAVSVIANVVETIPCRGSARRSS REQPCGERFPQAFFCMDTACVLIFTGEYLLRLFAAPSRCRFLRSVMSLIDVVAILPYY IGLLVPKNDDVSGAFVTLRVFRVFRIFKFSRHSQGLRILGYTLKSCASELGFLLFSLT MAIIIFATVMFYAEKGTNKTNFTSIPAAFWYTIVTMTTLGYGDMVPSTIAGKIFGSIC SLSGVLVIALPVPVIVSNFSRIYHQNQRADKRRAQQKVRLARIRLAKSGTTNAFLQYK QNGGLEDSGSGEEQALCVRNRSAFEQQHHHLLHCLEKTTCHEFTDELTFSEALGAVSP GGRTSRSTSVSSQPVGPGSLLSSCCPRRAKRRAIRLANSTASVSRGSMQELDMLAGLR RSHAPQSRSSLNAKPHDSLDLNCDSRDFVAAIISIPTPPANTPDESQPSSPGGGGRAG STLRNSSLGTPCLFPETVKISSL" BASE COUNT 924 a 1596 c 1147 g 1081 t ORIGIN 1 agaggaggag gagaactcag gcagctctgc agagggggcc aggagctcgg gtgtttggta 61 cccccagccc caccgctgtt gctgctcctg cagcggggac acaggtgagg acgccccgag 121 agagaggggg agggggacca ccactagcgc tgtcctcatc cttccctggt ccagccccca 181 cgccctaacc catcctggga tagtccccag gggtcccact ggaccttgcc cttcccaggc 241 ctccttccag ggaccccgca ccctccccct gcctatgcca ccttctctcc tatgcctggc 301 tgtggttgct tctcttcctc ctgctgccgc tgctgctact gccactgccc agtacacacc 361 gccagcccct cggggtgtgg tttccccaga cctgccccca acggtgggac ccagccttct 421 cccggcgtct cctgccagct tcctgcaaag cccaggagcc cccctccctg gagacacacc 481 caactccctt tcaacacccc acccccctct taatcccatt ttggggttaa cccccttcct 541 cttatttagt cttcatagat cccctgggtg ctctgggatt gtgcccaact tcctaacatt 601 tgagtcccgg cccttggaat tccccaggcc cctttttcct ccctgtagaa ctcctgagag 661 tgtcgaccag gctttgttgg ccgtctagat acccacctcc cccagataac tctcagcctc 721 tcaaaaaata acccagcccc ctgtctaccc ctttagatac cccttcccct ctccagccct 781 actaggaggc tctggcctct cctttcttcc ccagaactcc tgtagagtat agacaccccc 841 ccgggctatt cttggcaact ctaggcagtc ccaagacacc tttcagcctc tttacaacct 901 cctggatcca cagccacccc tcaagatgca ccagctccct ttccagatcc atgagggggg 961 tctaaccctc ttatgcttcc cctagaagtc ttgagggtgt ggacaaccct cctcacctgt 1021 ctcagcccct ctagaacccc cacttccagg cactctcagt ctctttcaag cacctctggt 1081 cccatttcta cccctctgga tgccccagtc tcctctccac cactgcaaag gaattccagg 1141 ctcttctgcc ttccctgaga ctcttgagag tgcagagaat tccccacgtg tttcttggcc 1201 cctctagacg cccccagaca cctctcaggc acaggctgac tcctttagaa tcatctcagt 1261 ctctctaaac cctgcctcag ctccttcttg gccccatccc cacacccctt ttctgctctt 1321 ctccatgtcc ccaaggccct tctcagtccc tcagaacatt gcccaggccc ctcctaggtt 1381 ctgtaaatgt cccccagact ccttcccatc tctttagttc ttcctcctgg ttcctcttgg 1441 cctctctaga cacccccagt ttccttgttt gggtggctca aggtgtctcc aagcccccac 1501 catcctggag acagccacat tctcctaaac gccaccctca ctaagtctcc ctgggcttgg 1561 ggagcggcac gatggcggca ggcctggcca cgtggctgcc ttttgctcgg gcagcagcag 1621 tgggctggct gcccctggcc cagcaacccc tgcccccggc accgggggtg aaggcatctc 1681 gaggagatga ggttctggtg gtgaacgtga gcggacggcg ctttgagact tggaagaata 1741 cgctggaccg ctacccagac accttgctgg gcagctcgga gaaggaattc ttctacgatg 1801 ctgactcagg cgagtacttc ttcgatcgcg accctgacat gttccgccat gtgctgaact 1861 tctaccgaac ggggcggctg cattgcccac ggcaggagtg catccaggcc ttcgacgaag 1921 agctggcttt ctacggcctg gttcccgagc tagtcggtga ctgctgcctt gaagagtatc 1981 gggaccgaaa gaaggagaat gccgagcgcc tggcagagga tgaggaggca gagcaggccg 2041 gggacggccc agccctgcca gcaggcagct ccctgcggca gcggctctgg cgggccttcg 2101 agaatccaca cacgagcacc gcagccctcg ttttctacta tgtgaccggc ttcttcatcg 2161 ccgtgtcggt catcgccaat gtggtggaga ccatcccatg ccgcggctct gcacgcaggt 2221 cctcaaggga gcagccctgt ggcgaacgct tcccacaggc ctttttctgc atggacacag 2281 cctgtgtact catattcaca ggtgaatacc tcctgcggct gtttgccgcc cccagccgtt 2341 gccgcttcct gcggagtgtc atgagcctca tcgacgtggt ggccatcctg ccctactaca 2401 ttgggctttt ggtgcccaag aacgacgatg tctctggcgc ctttgtcacc ctgcgtgtgt 2461 tccgggtgtt tcgcatcttc aagttctcca ggcactcaca gggcttgagg attctgggct 2521 acacactcaa gagctgtgcc tctgagctgg gctttctcct cttttcccta accatggcca 2581 tcatcatctt tgccactgtc atgttttatg ctgagaaggg cacaaacaag accaacttta 2641 caagcatccc tgcggccttc tggtatacca ttgtcaccat gaccacgctt ggctacggag 2701 acatggtgcc cagcaccatt gctggcaaga ttttcgggtc catctgctca ctcagtggcg 2761 tcttggtcat tgccctgcct gtgccagtca ttgtgtccaa ctttagccgc atctaccacc 2821 agaaccagcg ggctgacaag cgccgagcac agcagaaggt gcgcttggca aggatccgat 2881 tggcaaagag tggtaccacc aatgccttcc tgcagtacaa gcagaatggg ggccttgagg 2941 acagcggcag tggcgaggaa caggctcttt gtgtcaggaa ccgttctgcc tttgaacagc 3001 aacatcacca cttgctgcac tgtctagaga agacaacgtg ccatgagttc acagatgagc 3061 tcaccttcag tgaagccctg ggagccgtct cgccgggtgg ccgcaccagc cgtagcacct 3121 ctgtgtcttc ccagccagtg ggacccggaa gcctgctgtc ttcttgctgc cctcgcaggg 3181 ccaagcgccg cgccatccgc cttgccaact ccactgcctc agtcagccgt ggcagcatgc 3241 aggagctgga catgctggca gggctgcgca ggagccatgc ccctcagagc cgctccagcc 3301 tcaatgccaa gccccatgac agccttgacc tgaactgcga cagccgggac ttcgtggctg 3361 ccattatcag catccctacc cctcctgcca acaccccaga tgagagccaa ccttcctccc 3421 ctggcggcgg tggcagggcc ggcagcaccc tcaggaactc cagcctgggt accccttgcc 3481 tcttccccga gactgtcaag atctcatccc tgtgaggggt aggcctgctg attcagaggg 3541 tcctcttcat ttttgggaac tcctttccaa agccatattt ttgggaggca gagaggggca 3601 ggcttgggca ccccttctgc cccccccact gagaactatg caatggagtt tcatgaaatg 3661 gtccacatag tggggaagta gccaggaaat gagaaacttc ctcccacccc agacattttt 3721 cctggtggga gctgaagcac tgggcttcca caggcccatg gcctccttgc cctagcacac 3781 tgggactggc cccactctcc cagctggact cctgcatgct cctccccttg ggctctcaga 3841 tgaaggcaaa gctttgatcc gacatctgag ctctagccta agaaggagag ttgagatttc 3901 ctcctccctc tggctgggat atggagcttt ggaggttcag agaagagaac cctcacctct 3961 gatctggcct ctacgagagg tcctcatctc catctggccc aacaattccc agattctgaa 4021 gcttggaatg caaacacagg cttcatgggc tgtggcctct gcagcgacct gccatcccca 4081 ggccttgcct gaggggtcag gctgcctctc ccaacacaca ctcagatagc acaaattcta 4141 ccatcccctt ccctggctgc tggaaatgga ccccgcaacc ctgtcctctg ctgggccccc 4201 agcaaactct agcaatagca gctgctgccg tgtcattatg caaagcctct gaccagtttg 4261 ctgcagcatt tacatctgcc ctaatcagag gggccacctc taactcctcc tcctcctctc 4321 ttctcctctg gtttgcgtcc tccctggttg ggctggagtc tggactggct gagataagag 4381 cctggcaacc agcaaaagct gggctgtatt tggagatcat gggctgattc catgttcttg 4441 ggcaacagtc cagaagcatc aggggctccg gcctgggatg tttctgaact ttgggagtta 4501 taggagacag gaggaacttc tcctcctcct cctcccctac aattcctttt cacatattcc 4561 tttcttctcc ctcttgggtg accttccaaa actctgctct caggctgaaa tctggcatca 4621 tctcaggttc cctgtcccca gcactgtccc catggagctg gtggctgaca aagatgtagt 4681 ttccatcagt caataaaacc tgagaggaga gatgaaaaaa aaaaaaaaaa agaaaaaaaa 4741 aaaaaaaa //