LOCUS BC045659 4748 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens potassium voltage-gated channel, Shal-related
subfamily, member 1, mRNA (cDNA clone MGC:43677 IMAGE:5271042),
complete cds.
ACCESSION BC045659
VERSION BC045659.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4748)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4748)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (31-JAN-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 74 Row: m Column: 11
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 47078279.
FEATURES Location/Qualifiers
source 1..4748
/db_xref="H-InvDB:HIT000052960"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:43677 IMAGE:5271042"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..4748
/gene="KCND1"
/gene_synonym="KV4.1"
/db_xref="GeneID:3750"
/db_xref="HGNC:HGNC:6237"
/db_xref="MIM:300281"
CDS 1572..3515
/gene="KCND1"
/gene_synonym="KV4.1"
/codon_start=1
/product="potassium voltage-gated channel, Shal-related
subfamily, member 1"
/protein_id="AAH45659.1"
/db_xref="GeneID:3750"
/db_xref="HGNC:HGNC:6237"
/db_xref="MIM:300281"
/translation="MAAGLATWLPFARAAAVGWLPLAQQPLPPAPGVKASRGDEVLVV
NVSGRRFETWKNTLDRYPDTLLGSSEKEFFYDADSGEYFFDRDPDMFRHVLNFYRTGR
LHCPRQECIQAFDEELAFYGLVPELVGDCCLEEYRDRKKENAERLAEDEEAEQAGDGP
ALPAGSSLRQRLWRAFENPHTSTAALVFYYVTGFFIAVSVIANVVETIPCRGSARRSS
REQPCGERFPQAFFCMDTACVLIFTGEYLLRLFAAPSRCRFLRSVMSLIDVVAILPYY
IGLLVPKNDDVSGAFVTLRVFRVFRIFKFSRHSQGLRILGYTLKSCASELGFLLFSLT
MAIIIFATVMFYAEKGTNKTNFTSIPAAFWYTIVTMTTLGYGDMVPSTIAGKIFGSIC
SLSGVLVIALPVPVIVSNFSRIYHQNQRADKRRAQQKVRLARIRLAKSGTTNAFLQYK
QNGGLEDSGSGEEQALCVRNRSAFEQQHHHLLHCLEKTTCHEFTDELTFSEALGAVSP
GGRTSRSTSVSSQPVGPGSLLSSCCPRRAKRRAIRLANSTASVSRGSMQELDMLAGLR
RSHAPQSRSSLNAKPHDSLDLNCDSRDFVAAIISIPTPPANTPDESQPSSPGGGGRAG
STLRNSSLGTPCLFPETVKISSL"
BASE COUNT 924 a 1596 c 1147 g 1081 t
ORIGIN
1 agaggaggag gagaactcag gcagctctgc agagggggcc aggagctcgg gtgtttggta
61 cccccagccc caccgctgtt gctgctcctg cagcggggac acaggtgagg acgccccgag
121 agagaggggg agggggacca ccactagcgc tgtcctcatc cttccctggt ccagccccca
181 cgccctaacc catcctggga tagtccccag gggtcccact ggaccttgcc cttcccaggc
241 ctccttccag ggaccccgca ccctccccct gcctatgcca ccttctctcc tatgcctggc
301 tgtggttgct tctcttcctc ctgctgccgc tgctgctact gccactgccc agtacacacc
361 gccagcccct cggggtgtgg tttccccaga cctgccccca acggtgggac ccagccttct
421 cccggcgtct cctgccagct tcctgcaaag cccaggagcc cccctccctg gagacacacc
481 caactccctt tcaacacccc acccccctct taatcccatt ttggggttaa cccccttcct
541 cttatttagt cttcatagat cccctgggtg ctctgggatt gtgcccaact tcctaacatt
601 tgagtcccgg cccttggaat tccccaggcc cctttttcct ccctgtagaa ctcctgagag
661 tgtcgaccag gctttgttgg ccgtctagat acccacctcc cccagataac tctcagcctc
721 tcaaaaaata acccagcccc ctgtctaccc ctttagatac cccttcccct ctccagccct
781 actaggaggc tctggcctct cctttcttcc ccagaactcc tgtagagtat agacaccccc
841 ccgggctatt cttggcaact ctaggcagtc ccaagacacc tttcagcctc tttacaacct
901 cctggatcca cagccacccc tcaagatgca ccagctccct ttccagatcc atgagggggg
961 tctaaccctc ttatgcttcc cctagaagtc ttgagggtgt ggacaaccct cctcacctgt
1021 ctcagcccct ctagaacccc cacttccagg cactctcagt ctctttcaag cacctctggt
1081 cccatttcta cccctctgga tgccccagtc tcctctccac cactgcaaag gaattccagg
1141 ctcttctgcc ttccctgaga ctcttgagag tgcagagaat tccccacgtg tttcttggcc
1201 cctctagacg cccccagaca cctctcaggc acaggctgac tcctttagaa tcatctcagt
1261 ctctctaaac cctgcctcag ctccttcttg gccccatccc cacacccctt ttctgctctt
1321 ctccatgtcc ccaaggccct tctcagtccc tcagaacatt gcccaggccc ctcctaggtt
1381 ctgtaaatgt cccccagact ccttcccatc tctttagttc ttcctcctgg ttcctcttgg
1441 cctctctaga cacccccagt ttccttgttt gggtggctca aggtgtctcc aagcccccac
1501 catcctggag acagccacat tctcctaaac gccaccctca ctaagtctcc ctgggcttgg
1561 ggagcggcac gatggcggca ggcctggcca cgtggctgcc ttttgctcgg gcagcagcag
1621 tgggctggct gcccctggcc cagcaacccc tgcccccggc accgggggtg aaggcatctc
1681 gaggagatga ggttctggtg gtgaacgtga gcggacggcg ctttgagact tggaagaata
1741 cgctggaccg ctacccagac accttgctgg gcagctcgga gaaggaattc ttctacgatg
1801 ctgactcagg cgagtacttc ttcgatcgcg accctgacat gttccgccat gtgctgaact
1861 tctaccgaac ggggcggctg cattgcccac ggcaggagtg catccaggcc ttcgacgaag
1921 agctggcttt ctacggcctg gttcccgagc tagtcggtga ctgctgcctt gaagagtatc
1981 gggaccgaaa gaaggagaat gccgagcgcc tggcagagga tgaggaggca gagcaggccg
2041 gggacggccc agccctgcca gcaggcagct ccctgcggca gcggctctgg cgggccttcg
2101 agaatccaca cacgagcacc gcagccctcg ttttctacta tgtgaccggc ttcttcatcg
2161 ccgtgtcggt catcgccaat gtggtggaga ccatcccatg ccgcggctct gcacgcaggt
2221 cctcaaggga gcagccctgt ggcgaacgct tcccacaggc ctttttctgc atggacacag
2281 cctgtgtact catattcaca ggtgaatacc tcctgcggct gtttgccgcc cccagccgtt
2341 gccgcttcct gcggagtgtc atgagcctca tcgacgtggt ggccatcctg ccctactaca
2401 ttgggctttt ggtgcccaag aacgacgatg tctctggcgc ctttgtcacc ctgcgtgtgt
2461 tccgggtgtt tcgcatcttc aagttctcca ggcactcaca gggcttgagg attctgggct
2521 acacactcaa gagctgtgcc tctgagctgg gctttctcct cttttcccta accatggcca
2581 tcatcatctt tgccactgtc atgttttatg ctgagaaggg cacaaacaag accaacttta
2641 caagcatccc tgcggccttc tggtatacca ttgtcaccat gaccacgctt ggctacggag
2701 acatggtgcc cagcaccatt gctggcaaga ttttcgggtc catctgctca ctcagtggcg
2761 tcttggtcat tgccctgcct gtgccagtca ttgtgtccaa ctttagccgc atctaccacc
2821 agaaccagcg ggctgacaag cgccgagcac agcagaaggt gcgcttggca aggatccgat
2881 tggcaaagag tggtaccacc aatgccttcc tgcagtacaa gcagaatggg ggccttgagg
2941 acagcggcag tggcgaggaa caggctcttt gtgtcaggaa ccgttctgcc tttgaacagc
3001 aacatcacca cttgctgcac tgtctagaga agacaacgtg ccatgagttc acagatgagc
3061 tcaccttcag tgaagccctg ggagccgtct cgccgggtgg ccgcaccagc cgtagcacct
3121 ctgtgtcttc ccagccagtg ggacccggaa gcctgctgtc ttcttgctgc cctcgcaggg
3181 ccaagcgccg cgccatccgc cttgccaact ccactgcctc agtcagccgt ggcagcatgc
3241 aggagctgga catgctggca gggctgcgca ggagccatgc ccctcagagc cgctccagcc
3301 tcaatgccaa gccccatgac agccttgacc tgaactgcga cagccgggac ttcgtggctg
3361 ccattatcag catccctacc cctcctgcca acaccccaga tgagagccaa ccttcctccc
3421 ctggcggcgg tggcagggcc ggcagcaccc tcaggaactc cagcctgggt accccttgcc
3481 tcttccccga gactgtcaag atctcatccc tgtgaggggt aggcctgctg attcagaggg
3541 tcctcttcat ttttgggaac tcctttccaa agccatattt ttgggaggca gagaggggca
3601 ggcttgggca ccccttctgc cccccccact gagaactatg caatggagtt tcatgaaatg
3661 gtccacatag tggggaagta gccaggaaat gagaaacttc ctcccacccc agacattttt
3721 cctggtggga gctgaagcac tgggcttcca caggcccatg gcctccttgc cctagcacac
3781 tgggactggc cccactctcc cagctggact cctgcatgct cctccccttg ggctctcaga
3841 tgaaggcaaa gctttgatcc gacatctgag ctctagccta agaaggagag ttgagatttc
3901 ctcctccctc tggctgggat atggagcttt ggaggttcag agaagagaac cctcacctct
3961 gatctggcct ctacgagagg tcctcatctc catctggccc aacaattccc agattctgaa
4021 gcttggaatg caaacacagg cttcatgggc tgtggcctct gcagcgacct gccatcccca
4081 ggccttgcct gaggggtcag gctgcctctc ccaacacaca ctcagatagc acaaattcta
4141 ccatcccctt ccctggctgc tggaaatgga ccccgcaacc ctgtcctctg ctgggccccc
4201 agcaaactct agcaatagca gctgctgccg tgtcattatg caaagcctct gaccagtttg
4261 ctgcagcatt tacatctgcc ctaatcagag gggccacctc taactcctcc tcctcctctc
4321 ttctcctctg gtttgcgtcc tccctggttg ggctggagtc tggactggct gagataagag
4381 cctggcaacc agcaaaagct gggctgtatt tggagatcat gggctgattc catgttcttg
4441 ggcaacagtc cagaagcatc aggggctccg gcctgggatg tttctgaact ttgggagtta
4501 taggagacag gaggaacttc tcctcctcct cctcccctac aattcctttt cacatattcc
4561 tttcttctcc ctcttgggtg accttccaaa actctgctct caggctgaaa tctggcatca
4621 tctcaggttc cctgtcccca gcactgtccc catggagctg gtggctgaca aagatgtagt
4681 ttccatcagt caataaaacc tgagaggaga gatgaaaaaa aaaaaaaaaa agaaaaaaaa
4741 aaaaaaaa
//