LOCUS       BC042943                3158 bp    mRNA    linear   HUM 02-DEC-2006
DEFINITION  Homo sapiens USP6 N-terminal like, mRNA (cDNA clone MGC:41831
            IMAGE:5296060), complete cds.
ACCESSION   BC042943
VERSION     BC042943.2
KEYWORDS    MGC.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 3158)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
   PUBMED   12477932
REFERENCE   2  (bases 1 to 3158)
  CONSRTM   NIH MGC Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-JAN-2003) National Institutes of Health, Mammalian
            Gene Collection (MGC), Bethesda, MD 20892-2590, USA
  REMARK    NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT     On Aug 25, 2003 this sequence version replaced BC042943.1.
            Contact: MGC help desk
            Email: cgapbs-r@mail.nih.gov
            Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
            cDNA Library Preparation: Michael J. Brownstein (NHGRI) &  Shiraki
            Toshiyuki and Piero Carninci (RIKEN)
            cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
            DNA Sequencing by: Genome Sequence Centre,
            BC Cancer Agency, Vancouver, BC, Canada
            info@bcgsc.bc.ca
            Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
            Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
            Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
            Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
            Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
            Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
            Kim MacDonald,  Mike R. Mayo, Josh Moran, Diana Palmquist, JR
            Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
            Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
            
            Clone distribution: MGC clone distribution information can be found
            through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
            Series: IRAK Plate: 76 Row: k Column: 9.
FEATURES             Location/Qualifiers
     source          1..3158
                     /db_xref="H-InvDB:HIT000052762"
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /clone="MGC:41831 IMAGE:5296060"
                     /tissue_type="Testis"
                     /clone_lib="NIH_MGC_97"
                     /lab_host="DH10B"
                     /note="Vector: pBluescriptR"
     gene            1..3158
                     /gene="USP6NL"
                     /gene_synonym="KIAA0019"
                     /gene_synonym="RNTRE"
                     /gene_synonym="TRE2NL"
                     /db_xref="GeneID:9712"
                     /db_xref="HGNC:HGNC:16858"
                     /db_xref="MIM:605405"
     CDS             269..2755
                     /gene="USP6NL"
                     /gene_synonym="KIAA0019"
                     /gene_synonym="RNTRE"
                     /gene_synonym="TRE2NL"
                     /codon_start=1
                     /product="USP6 N-terminal like"
                     /protein_id="AAH42943.1"
                     /db_xref="GeneID:9712"
                     /db_xref="HGNC:HGNC:16858"
                     /db_xref="MIM:605405"
                     /translation="MNSDQDVALKLAQERAEIVAKYDRGREGAEIEPWEDADYLVYKV
                     TDRFGFLHEEELPDHNVAVERQKHLEIERTTKWLKMLKGWEKYKNTEKFHRRIYKGIP
                     LQLRGEVWALLLEIPKMKEETRDLYSKLKHRARGCSPDIRQIDLDVNRTFRDHIMFRD
                     RYGVKQQSLFHVLAAYSIYNTEVGYCQGMSQITALLLMYMNEEDAFWALVKLFSGPKH
                     AMHGFFVQGFPKLLRFQEHHEKILNKFLSKLKQHLDSQEIYTSFYTMKWFFQCFLDRT
                     PFTLNLRIWDIYIFEGERVLTAMSYTILKLHKKHLMKLSMEELVEFFQETLAKDFFFE
                     DDFVIEQLQISMTELKRAKLDLPEPGKEDEYPKKPLGQLPPELQSWGVHHLSNGQRSV
                     GRPSPLASGRRESGAPHRRHEHSPHPQSRTGTPERAQPPRRKSVEEESKKLKDEADFQ
                     RKLPSGPQDSSRQYNHAAANQNSNATSNIRKEFVPKWNKPSDVSATERTAKYTMEGKG
                     RAAHPALAVTVPGPAEVRVSNVRPKMKALDAEDGKRGSTASQYDNVPGPELDSGASVE
                     EALERAYSQSPRHALYPPSPRKHAEPSSSPSKVSNKFTFKVQPPSHARYPSQLDGEAR
                     GLAHPPSYSNPPVYHGNSPKHFPTANSSFASPQFSPGTQLNPSRRPHGSTLSVSASPE
                     KSYSRPSPLVLPSSRIEVLPVDTGAGGYSGNSGSPKNGKLIIPPVDYLPDNRTWSEVS
                     YTYRPETQGQSWTRDASRGNLPKYSAFQLAPFQDHGLPAVSVDSPVRYKASPAAEDAS
                     PSGYPYSGPPPPAYHYRNRDGLSIQESVLL"
BASE COUNT          904 a          791 c          739 g          724 t
ORIGIN      
        1 gccggggaac ttcctggttc ccgggctcgg cttcgccggg atcctcttgg aagggaaaca
       61 atggggcgga gggcactgcg gtagccgccg ccgccgccgc gccgcgccgc gccggatctg
      121 ctcggccgcc cgggaccgcc agctctgtcc gctgcccaca gcctagcagt cgggaccgta
      181 ctgaggacat gtattcctct gagaaacctt ggacagcaga ttttggttta atatctgatt
      241 gggacaacat tcagacccat ttccagtcat gaattcagac caggatgtag cactcaaact
      301 tgcccaggag cgagctgaaa tagttgctaa atatgacaga ggacgagaag gtgcagagat
      361 tgaaccttgg gaagatgctg attaccttgt ttacaaagtc acagatagat ttggcttttt
      421 acatgaggag gagctcccag atcataatgt ggctgtggaa cggcaaaagc acctggaaat
      481 tgaaagaact accaaatggc tgaaaatgct gaaaggatgg gaaaaataca agaacactga
      541 aaagtttcat aggcgaattt acaaaggaat accactccag ctcagaggtg aagtctgggc
      601 cctccttctt gagatcccta aaatgaaaga agaaacaagg gacctgtata gtaaattaaa
      661 acacagagca cggggctgtt cacctgacat cagacaaata gacctggatg tcaaccgcac
      721 atttcgggac cacattatgt ttagagacag atatggtgtt aagcaacaat ccttattcca
      781 tgtgcttgct gcctattcta tttataacac ggaagtcggg tattgtcagg ggatgagcca
      841 gatcacagct ttactcctca tgtatatgaa cgaggaagat gccttctggg ccctggtcaa
      901 actcttctca ggccctaaac atgccatgca tggctttttt gtccaaggtt ttcctaaact
      961 cttgaggttt caagaacatc atgaaaaaat actgaacaaa tttctgtcca agcttaagca
     1021 acacttggat tctcaagaaa tctacacaag tttttacaca atgaaatggt tttttcagtg
     1081 tttccttgat cgtactccct ttacactaaa cctcagaata tgggatatct acatctttga
     1141 aggagaacga gttcttactg ctatgtctta caccatctta aaattacaca aaaaacatct
     1201 aatgaaattg tccatggaag aacttgtaga attttttcag gagaccctgg caaaggattt
     1261 tttctttgaa gatgattttg tgatagagca acttcagatt tctatgacag aactaaagcg
     1321 ggcaaagtta gaccttccag aacctggtaa agaggatgaa tatccaaaga agcccttggg
     1381 gcagcttcca cctgaacttc agtcttgggg cgtccatcac ttgagcaacg gacagaggag
     1441 cgtgggccgg ccgagcccgc tggccagcgg caggagggag agcggggcgc cccacaggag
     1501 gcacgagcac tccccgcacc cccagagcag gaccgggacg cccgagagag cacagccgcc
     1561 aagacggaaa tcggtggagg aggagagcaa aaagcttaaa gatgaggcag attttcaaag
     1621 aaaactccca tcgggtccac aggacagttc caggcaatat aatcacgcag ctgccaacca
     1681 aaatagcaac gccacttcaa atatcaggaa ggagtttgtg cccaaatgga ataaaccgtc
     1741 agacgtctca gctacagaga gaactgccaa atacaccatg gaaggcaaag gtcgagcagc
     1801 gcaccccgcg ctcgcagtta ccgtcccagg tcctgccgag gtgcgggtgt caaacgtgcg
     1861 gccaaagatg aaggccctgg atgctgagga cgggaagcgg ggctccactg catcgcagta
     1921 cgacaacgtg ccaggcccgg agctggacag cggcgcttcc gtggaggagg cgctggaaag
     1981 ggcttactcc cagagccccc ggcatgccct ttaccctcct agcccgagaa agcacgctga
     2041 gccaagttct agtccatcaa aagtatccaa caagtttact tttaaagtac agcctccaag
     2101 tcatgcacga tatccgtccc agctagatgg ggaagcccga gggctagctc atcccccctc
     2161 ctacagcaat ccccccgttt accacggaaa ctctcccaaa cacttcccta ctgccaacag
     2221 cagctttgct tctccacagt ttagccctgg gactcaactg aatccttcca ggagacctca
     2281 tggttctact ctttccgtca gtgcttctcc ggagaaatct tacagccgcc caagccccct
     2341 tgtactgccg tctagtcgaa tagaagtcct ccctgttgac actggtgctg ggggatattc
     2401 gggcaattca gggtcaccaa agaatggaaa attgatcatt ccaccagtgg attacttgcc
     2461 agataacaga acatggtcag aagttagtta tacatacaga cctgagacgc agggacaatc
     2521 atggacccga gatgctagcc gtggcaattt accaaaatac tcagcctttc aactcgcacc
     2581 ctttcaggac catggcctcc ctgcagtttc tgtagatagt cccgtgagat ataaagcttc
     2641 accggccgca gaagatgcca gtccatctgg atatccatat tcagggcccc cgcctccagc
     2701 ctaccactac aggaatcggg acgggctttc catccaagag tcagtgttgc tgtgagattt
     2761 gacgtgtact tgctaaagac gagagagaaa ccacgtgaaa cctacattgc tatgttcata
     2821 attgccaaag cagtatttat actattgtaa acaactcgca catctctcct gtctgttagt
     2881 aataagaata cagggaaatg tcttcagccc cacgtagatg ctgcttaaga tgagcgtttc
     2941 aattgcatca tcactgacct gttagaattt aacccggaaa catcgcaata gcatttaggg
     3001 atgcacgcac agtggtaatt tattactcag ttccggttat gtttttctcc aaaacctgaa
     3061 catttttact ctgttggctc attctatttt gactaatgtt acaaagtact gaaaaaactg
     3121 tagaatagat atttttaagg ctaaaaaaaa aaaaaaaa
//