LOCUS BC042943 3158 bp mRNA linear HUM 02-DEC-2006 DEFINITION Homo sapiens USP6 N-terminal like, mRNA (cDNA clone MGC:41831 IMAGE:5296060), complete cds. ACCESSION BC042943 VERSION BC042943.2 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 3158) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 3158) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (09-JAN-2003) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT On Aug 25, 2003 this sequence version replaced BC042943.1. Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Miklos Palkovits, M.D., Ph.D. cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki Toshiyuki and Piero Carninci (RIKEN) cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Genome Sequence Centre, BC Cancer Agency, Vancouver, BC, Canada info@bcgsc.bc.ca Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 76 Row: k Column: 9. FEATURES Location/Qualifiers source 1..3158 /db_xref="H-InvDB:HIT000052762" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:41831 IMAGE:5296060" /tissue_type="Testis" /clone_lib="NIH_MGC_97" /lab_host="DH10B" /note="Vector: pBluescriptR" gene 1..3158 /gene="USP6NL" /gene_synonym="KIAA0019" /gene_synonym="RNTRE" /gene_synonym="TRE2NL" /db_xref="GeneID:9712" /db_xref="HGNC:HGNC:16858" /db_xref="MIM:605405" CDS 269..2755 /gene="USP6NL" /gene_synonym="KIAA0019" /gene_synonym="RNTRE" /gene_synonym="TRE2NL" /codon_start=1 /product="USP6 N-terminal like" /protein_id="AAH42943.1" /db_xref="GeneID:9712" /db_xref="HGNC:HGNC:16858" /db_xref="MIM:605405" /translation="MNSDQDVALKLAQERAEIVAKYDRGREGAEIEPWEDADYLVYKV TDRFGFLHEEELPDHNVAVERQKHLEIERTTKWLKMLKGWEKYKNTEKFHRRIYKGIP LQLRGEVWALLLEIPKMKEETRDLYSKLKHRARGCSPDIRQIDLDVNRTFRDHIMFRD RYGVKQQSLFHVLAAYSIYNTEVGYCQGMSQITALLLMYMNEEDAFWALVKLFSGPKH AMHGFFVQGFPKLLRFQEHHEKILNKFLSKLKQHLDSQEIYTSFYTMKWFFQCFLDRT PFTLNLRIWDIYIFEGERVLTAMSYTILKLHKKHLMKLSMEELVEFFQETLAKDFFFE DDFVIEQLQISMTELKRAKLDLPEPGKEDEYPKKPLGQLPPELQSWGVHHLSNGQRSV GRPSPLASGRRESGAPHRRHEHSPHPQSRTGTPERAQPPRRKSVEEESKKLKDEADFQ RKLPSGPQDSSRQYNHAAANQNSNATSNIRKEFVPKWNKPSDVSATERTAKYTMEGKG RAAHPALAVTVPGPAEVRVSNVRPKMKALDAEDGKRGSTASQYDNVPGPELDSGASVE EALERAYSQSPRHALYPPSPRKHAEPSSSPSKVSNKFTFKVQPPSHARYPSQLDGEAR GLAHPPSYSNPPVYHGNSPKHFPTANSSFASPQFSPGTQLNPSRRPHGSTLSVSASPE KSYSRPSPLVLPSSRIEVLPVDTGAGGYSGNSGSPKNGKLIIPPVDYLPDNRTWSEVS YTYRPETQGQSWTRDASRGNLPKYSAFQLAPFQDHGLPAVSVDSPVRYKASPAAEDAS PSGYPYSGPPPPAYHYRNRDGLSIQESVLL" BASE COUNT 904 a 791 c 739 g 724 t ORIGIN 1 gccggggaac ttcctggttc ccgggctcgg cttcgccggg atcctcttgg aagggaaaca 61 atggggcgga gggcactgcg gtagccgccg ccgccgccgc gccgcgccgc gccggatctg 121 ctcggccgcc cgggaccgcc agctctgtcc gctgcccaca gcctagcagt cgggaccgta 181 ctgaggacat gtattcctct gagaaacctt ggacagcaga ttttggttta atatctgatt 241 gggacaacat tcagacccat ttccagtcat gaattcagac caggatgtag cactcaaact 301 tgcccaggag cgagctgaaa tagttgctaa atatgacaga ggacgagaag gtgcagagat 361 tgaaccttgg gaagatgctg attaccttgt ttacaaagtc acagatagat ttggcttttt 421 acatgaggag gagctcccag atcataatgt ggctgtggaa cggcaaaagc acctggaaat 481 tgaaagaact accaaatggc tgaaaatgct gaaaggatgg gaaaaataca agaacactga 541 aaagtttcat aggcgaattt acaaaggaat accactccag ctcagaggtg aagtctgggc 601 cctccttctt gagatcccta aaatgaaaga agaaacaagg gacctgtata gtaaattaaa 661 acacagagca cggggctgtt cacctgacat cagacaaata gacctggatg tcaaccgcac 721 atttcgggac cacattatgt ttagagacag atatggtgtt aagcaacaat ccttattcca 781 tgtgcttgct gcctattcta tttataacac ggaagtcggg tattgtcagg ggatgagcca 841 gatcacagct ttactcctca tgtatatgaa cgaggaagat gccttctggg ccctggtcaa 901 actcttctca ggccctaaac atgccatgca tggctttttt gtccaaggtt ttcctaaact 961 cttgaggttt caagaacatc atgaaaaaat actgaacaaa tttctgtcca agcttaagca 1021 acacttggat tctcaagaaa tctacacaag tttttacaca atgaaatggt tttttcagtg 1081 tttccttgat cgtactccct ttacactaaa cctcagaata tgggatatct acatctttga 1141 aggagaacga gttcttactg ctatgtctta caccatctta aaattacaca aaaaacatct 1201 aatgaaattg tccatggaag aacttgtaga attttttcag gagaccctgg caaaggattt 1261 tttctttgaa gatgattttg tgatagagca acttcagatt tctatgacag aactaaagcg 1321 ggcaaagtta gaccttccag aacctggtaa agaggatgaa tatccaaaga agcccttggg 1381 gcagcttcca cctgaacttc agtcttgggg cgtccatcac ttgagcaacg gacagaggag 1441 cgtgggccgg ccgagcccgc tggccagcgg caggagggag agcggggcgc cccacaggag 1501 gcacgagcac tccccgcacc cccagagcag gaccgggacg cccgagagag cacagccgcc 1561 aagacggaaa tcggtggagg aggagagcaa aaagcttaaa gatgaggcag attttcaaag 1621 aaaactccca tcgggtccac aggacagttc caggcaatat aatcacgcag ctgccaacca 1681 aaatagcaac gccacttcaa atatcaggaa ggagtttgtg cccaaatgga ataaaccgtc 1741 agacgtctca gctacagaga gaactgccaa atacaccatg gaaggcaaag gtcgagcagc 1801 gcaccccgcg ctcgcagtta ccgtcccagg tcctgccgag gtgcgggtgt caaacgtgcg 1861 gccaaagatg aaggccctgg atgctgagga cgggaagcgg ggctccactg catcgcagta 1921 cgacaacgtg ccaggcccgg agctggacag cggcgcttcc gtggaggagg cgctggaaag 1981 ggcttactcc cagagccccc ggcatgccct ttaccctcct agcccgagaa agcacgctga 2041 gccaagttct agtccatcaa aagtatccaa caagtttact tttaaagtac agcctccaag 2101 tcatgcacga tatccgtccc agctagatgg ggaagcccga gggctagctc atcccccctc 2161 ctacagcaat ccccccgttt accacggaaa ctctcccaaa cacttcccta ctgccaacag 2221 cagctttgct tctccacagt ttagccctgg gactcaactg aatccttcca ggagacctca 2281 tggttctact ctttccgtca gtgcttctcc ggagaaatct tacagccgcc caagccccct 2341 tgtactgccg tctagtcgaa tagaagtcct ccctgttgac actggtgctg ggggatattc 2401 gggcaattca gggtcaccaa agaatggaaa attgatcatt ccaccagtgg attacttgcc 2461 agataacaga acatggtcag aagttagtta tacatacaga cctgagacgc agggacaatc 2521 atggacccga gatgctagcc gtggcaattt accaaaatac tcagcctttc aactcgcacc 2581 ctttcaggac catggcctcc ctgcagtttc tgtagatagt cccgtgagat ataaagcttc 2641 accggccgca gaagatgcca gtccatctgg atatccatat tcagggcccc cgcctccagc 2701 ctaccactac aggaatcggg acgggctttc catccaagag tcagtgttgc tgtgagattt 2761 gacgtgtact tgctaaagac gagagagaaa ccacgtgaaa cctacattgc tatgttcata 2821 attgccaaag cagtatttat actattgtaa acaactcgca catctctcct gtctgttagt 2881 aataagaata cagggaaatg tcttcagccc cacgtagatg ctgcttaaga tgagcgtttc 2941 aattgcatca tcactgacct gttagaattt aacccggaaa catcgcaata gcatttaggg 3001 atgcacgcac agtggtaatt tattactcag ttccggttat gtttttctcc aaaacctgaa 3061 catttttact ctgttggctc attctatttt gactaatgtt acaaagtact gaaaaaactg 3121 tagaatagat atttttaagg ctaaaaaaaa aaaaaaaa //