LOCUS BC042943 3158 bp mRNA linear HUM 02-DEC-2006
DEFINITION Homo sapiens USP6 N-terminal like, mRNA (cDNA clone MGC:41831
IMAGE:5296060), complete cds.
ACCESSION BC042943
VERSION BC042943.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3158)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3158)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (09-JAN-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 25, 2003 this sequence version replaced BC042943.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 76 Row: k Column: 9.
FEATURES Location/Qualifiers
source 1..3158
/db_xref="H-InvDB:HIT000052762"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:41831 IMAGE:5296060"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..3158
/gene="USP6NL"
/gene_synonym="KIAA0019"
/gene_synonym="RNTRE"
/gene_synonym="TRE2NL"
/db_xref="GeneID:9712"
/db_xref="HGNC:HGNC:16858"
/db_xref="MIM:605405"
CDS 269..2755
/gene="USP6NL"
/gene_synonym="KIAA0019"
/gene_synonym="RNTRE"
/gene_synonym="TRE2NL"
/codon_start=1
/product="USP6 N-terminal like"
/protein_id="AAH42943.1"
/db_xref="GeneID:9712"
/db_xref="HGNC:HGNC:16858"
/db_xref="MIM:605405"
/translation="MNSDQDVALKLAQERAEIVAKYDRGREGAEIEPWEDADYLVYKV
TDRFGFLHEEELPDHNVAVERQKHLEIERTTKWLKMLKGWEKYKNTEKFHRRIYKGIP
LQLRGEVWALLLEIPKMKEETRDLYSKLKHRARGCSPDIRQIDLDVNRTFRDHIMFRD
RYGVKQQSLFHVLAAYSIYNTEVGYCQGMSQITALLLMYMNEEDAFWALVKLFSGPKH
AMHGFFVQGFPKLLRFQEHHEKILNKFLSKLKQHLDSQEIYTSFYTMKWFFQCFLDRT
PFTLNLRIWDIYIFEGERVLTAMSYTILKLHKKHLMKLSMEELVEFFQETLAKDFFFE
DDFVIEQLQISMTELKRAKLDLPEPGKEDEYPKKPLGQLPPELQSWGVHHLSNGQRSV
GRPSPLASGRRESGAPHRRHEHSPHPQSRTGTPERAQPPRRKSVEEESKKLKDEADFQ
RKLPSGPQDSSRQYNHAAANQNSNATSNIRKEFVPKWNKPSDVSATERTAKYTMEGKG
RAAHPALAVTVPGPAEVRVSNVRPKMKALDAEDGKRGSTASQYDNVPGPELDSGASVE
EALERAYSQSPRHALYPPSPRKHAEPSSSPSKVSNKFTFKVQPPSHARYPSQLDGEAR
GLAHPPSYSNPPVYHGNSPKHFPTANSSFASPQFSPGTQLNPSRRPHGSTLSVSASPE
KSYSRPSPLVLPSSRIEVLPVDTGAGGYSGNSGSPKNGKLIIPPVDYLPDNRTWSEVS
YTYRPETQGQSWTRDASRGNLPKYSAFQLAPFQDHGLPAVSVDSPVRYKASPAAEDAS
PSGYPYSGPPPPAYHYRNRDGLSIQESVLL"
BASE COUNT 904 a 791 c 739 g 724 t
ORIGIN
1 gccggggaac ttcctggttc ccgggctcgg cttcgccggg atcctcttgg aagggaaaca
61 atggggcgga gggcactgcg gtagccgccg ccgccgccgc gccgcgccgc gccggatctg
121 ctcggccgcc cgggaccgcc agctctgtcc gctgcccaca gcctagcagt cgggaccgta
181 ctgaggacat gtattcctct gagaaacctt ggacagcaga ttttggttta atatctgatt
241 gggacaacat tcagacccat ttccagtcat gaattcagac caggatgtag cactcaaact
301 tgcccaggag cgagctgaaa tagttgctaa atatgacaga ggacgagaag gtgcagagat
361 tgaaccttgg gaagatgctg attaccttgt ttacaaagtc acagatagat ttggcttttt
421 acatgaggag gagctcccag atcataatgt ggctgtggaa cggcaaaagc acctggaaat
481 tgaaagaact accaaatggc tgaaaatgct gaaaggatgg gaaaaataca agaacactga
541 aaagtttcat aggcgaattt acaaaggaat accactccag ctcagaggtg aagtctgggc
601 cctccttctt gagatcccta aaatgaaaga agaaacaagg gacctgtata gtaaattaaa
661 acacagagca cggggctgtt cacctgacat cagacaaata gacctggatg tcaaccgcac
721 atttcgggac cacattatgt ttagagacag atatggtgtt aagcaacaat ccttattcca
781 tgtgcttgct gcctattcta tttataacac ggaagtcggg tattgtcagg ggatgagcca
841 gatcacagct ttactcctca tgtatatgaa cgaggaagat gccttctggg ccctggtcaa
901 actcttctca ggccctaaac atgccatgca tggctttttt gtccaaggtt ttcctaaact
961 cttgaggttt caagaacatc atgaaaaaat actgaacaaa tttctgtcca agcttaagca
1021 acacttggat tctcaagaaa tctacacaag tttttacaca atgaaatggt tttttcagtg
1081 tttccttgat cgtactccct ttacactaaa cctcagaata tgggatatct acatctttga
1141 aggagaacga gttcttactg ctatgtctta caccatctta aaattacaca aaaaacatct
1201 aatgaaattg tccatggaag aacttgtaga attttttcag gagaccctgg caaaggattt
1261 tttctttgaa gatgattttg tgatagagca acttcagatt tctatgacag aactaaagcg
1321 ggcaaagtta gaccttccag aacctggtaa agaggatgaa tatccaaaga agcccttggg
1381 gcagcttcca cctgaacttc agtcttgggg cgtccatcac ttgagcaacg gacagaggag
1441 cgtgggccgg ccgagcccgc tggccagcgg caggagggag agcggggcgc cccacaggag
1501 gcacgagcac tccccgcacc cccagagcag gaccgggacg cccgagagag cacagccgcc
1561 aagacggaaa tcggtggagg aggagagcaa aaagcttaaa gatgaggcag attttcaaag
1621 aaaactccca tcgggtccac aggacagttc caggcaatat aatcacgcag ctgccaacca
1681 aaatagcaac gccacttcaa atatcaggaa ggagtttgtg cccaaatgga ataaaccgtc
1741 agacgtctca gctacagaga gaactgccaa atacaccatg gaaggcaaag gtcgagcagc
1801 gcaccccgcg ctcgcagtta ccgtcccagg tcctgccgag gtgcgggtgt caaacgtgcg
1861 gccaaagatg aaggccctgg atgctgagga cgggaagcgg ggctccactg catcgcagta
1921 cgacaacgtg ccaggcccgg agctggacag cggcgcttcc gtggaggagg cgctggaaag
1981 ggcttactcc cagagccccc ggcatgccct ttaccctcct agcccgagaa agcacgctga
2041 gccaagttct agtccatcaa aagtatccaa caagtttact tttaaagtac agcctccaag
2101 tcatgcacga tatccgtccc agctagatgg ggaagcccga gggctagctc atcccccctc
2161 ctacagcaat ccccccgttt accacggaaa ctctcccaaa cacttcccta ctgccaacag
2221 cagctttgct tctccacagt ttagccctgg gactcaactg aatccttcca ggagacctca
2281 tggttctact ctttccgtca gtgcttctcc ggagaaatct tacagccgcc caagccccct
2341 tgtactgccg tctagtcgaa tagaagtcct ccctgttgac actggtgctg ggggatattc
2401 gggcaattca gggtcaccaa agaatggaaa attgatcatt ccaccagtgg attacttgcc
2461 agataacaga acatggtcag aagttagtta tacatacaga cctgagacgc agggacaatc
2521 atggacccga gatgctagcc gtggcaattt accaaaatac tcagcctttc aactcgcacc
2581 ctttcaggac catggcctcc ctgcagtttc tgtagatagt cccgtgagat ataaagcttc
2641 accggccgca gaagatgcca gtccatctgg atatccatat tcagggcccc cgcctccagc
2701 ctaccactac aggaatcggg acgggctttc catccaagag tcagtgttgc tgtgagattt
2761 gacgtgtact tgctaaagac gagagagaaa ccacgtgaaa cctacattgc tatgttcata
2821 attgccaaag cagtatttat actattgtaa acaactcgca catctctcct gtctgttagt
2881 aataagaata cagggaaatg tcttcagccc cacgtagatg ctgcttaaga tgagcgtttc
2941 aattgcatca tcactgacct gttagaattt aacccggaaa catcgcaata gcatttaggg
3001 atgcacgcac agtggtaatt tattactcag ttccggttat gtttttctcc aaaacctgaa
3061 catttttact ctgttggctc attctatttt gactaatgtt acaaagtact gaaaaaactg
3121 tagaatagat atttttaagg ctaaaaaaaa aaaaaaaa
//