LOCUS BC042889 3108 bp mRNA linear HTC 27-OCT-2008 DEFINITION Homo sapiens CD47 molecule, mRNA (cDNA clone IMAGE:4822825), with apparent retained intron. ACCESSION BC042889 VERSION BC042889.1 KEYWORDS HTC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 3108) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 3108) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (06-JAN-2003) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Miklos Palkovits, M.D., Ph.D. cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki Toshiyuki and Piero Carninci (RIKEN) cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Baylor College of Medicine Human Genome Sequencing Center Center code: BCM-HGSC Web site: http://www.hgsc.bcm.tmc.edu/cdna/ Contact: amg@bcm.tmc.edu Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H., Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati, A.N., Gibbs, R.A. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 71 Row: g Column: 11 This clone has the following problem: retained intron. FEATURES Location/Qualifiers source 1..3108 /db_xref="H-InvDB:HIT000097402" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="IMAGE:4822825" /tissue_type="Testis" /clone_lib="NIH_MGC_97" /lab_host="DH10B" /note="Vector: pBluescriptR" BASE COUNT 969 a 527 c 584 g 1028 t ORIGIN 1 actctgtctc aaaaaaaata aaaaagaatt atgaatatta cttttataat attctcacca 61 ctgggaaaaa tgcactattc tgtgtctaag tagctgctta ccttaaccaa gtgatatttg 121 ggcaagggga tcgttgcctt ttgctactgg ttgagacgaa gcatggcacc ccctagtaga 181 gaaggatccc aattacttcc aatttgtgat gtacacattt tagaaagata caggctattg 241 ccacagagat agaccaaaac atctcatttt ctttctttgt aaacctagat ctgatttccc 301 aactaagtct gtttcctttg tgaatgctgt gggtatgatc cacagaaagg ctacataatg 361 aaatgatagc tttacaatta atttggctgt agagttgtag actagttagc atatcattgc 421 atatttgttt atttagaaat gatttccaat tgtggaacct cactaactgc ctgcttggct 481 tgttactaat cctagcattc aaagaatcaa aaggaatgat gaatgatggt aagtataaaa 541 tgcacttaat aattatagat cagttaaaac atggacattg gaaaacaaaa aagcttcttg 601 aaaatgtggc tcttttttag taaaagggac actgtcagat gataaaggtt cacatttctt 661 gatgtataca acttaaatct actttgctaa aaattgcaaa actactactg taaaaactgt 721 agggtgtcac gaatcagact ccagtcatat ggctcccagc aaagagaaat taccactttt 781 tgtaaaatgt ttttcagatt ccgtgtctgg tgactgtaac tttaagatgc cttttataag 841 gcacataaat aatctggcac aaatctttat cattttgaca gagtttcttt tatgcttgtg 901 ttggtgattt tgttgcattt aacccatggg gacttaacat ctctgctttt ccaatcagga 961 gcttggttct aaccttttgg gagatgatta aagagagagg ttgagagaga gagagagaga 1021 gagagagaga gagagagaga tgtttcgtcc tcagcttttg cttccatttt ttttttaaga 1081 actctgggct aataacttct aatctttata gaatatttca aagaaatata tttgttctta 1141 aagatacata ggtttgagat attgagtgct acaagcattt attttggttt taccttaaca 1201 tattatgatt cctcagtttt gttggcattt agtaattatg tttatgtttt tatcttatca 1261 aaaaatgtct tcttaccttt gatatttata atcactcctc ggtcatgtaa atagtttgct 1321 ttatattttt ctgttttaaa gtctgtgacc ttacctgccc tcttctgtag caaagtgcag 1381 catttaactc aggaagctat attcccccca agtgtcatta atatttgcat aagattaaaa 1441 acactccagt cggccgggcg cggtggctca cgcctgtaat cccagcactt tgggaggccg 1501 aggcgggcgg atcacaaggt caggagatcg agaccatcct ggctaacacg gtgaaacccc 1561 gtctctacta aaactacaaa aaattagccg ggcatggtgg cgggcacctg tggtcccagc 1621 tacttgggag gctgaggcag gagaatggcg tgaacccggg aggcagagct tgcagtgagc 1681 caagatcgtg ccactacact ccagcctggg tgacagagca agactccgtc tcaagaaaaa 1741 aaaaaaaaaa aaaaaaaaaa aaaaacactc cagtcatgca ttggtgaaca aagtttaaaa 1801 caacgtgtat tcagcatgga gtcacagaat gatcctactt ttgtatgttt gtgtcacagc 1861 ctttaaaagc atgtcttgtt atataagcca ttaccctcct aaaaaagact atagttcaca 1921 ggaataagtt aaaagacata acaaaacata aaatgactag taccaggaat tgtgaccatg 1981 gtttgttctg gtaactgtgg catggcatgg tttgttccag gaattgtggc atggtttgtt 2041 catgtttaca ttctgatgtc ctattttttt ttttaatttc tatgtccttt ccttttcctt 2101 ggtggtgtca ttgttctgta gctgtatgaa gaaactaaac ttttctccat tttcaggaaa 2161 gcaatctaag aatcttgagt gcctcttcct ttgttaattt ctcttaagat gtgacttttt 2221 taaactactg catcaggaaa tattgtaaaa cagttttgcc ttgaatattt gtgatgaaat 2281 ctacgatgat cttcaagatt ctcttaattt tgctaatatt cagctgatca gaatttgttt 2341 ttaaaatgtc tggctggtgg gtacttccca ctgacaactg cttattgctt acagtatgtc 2401 tgccttgtca atgaatgagg ttcagggtgc ttcctaggga tcagagtcag taccattttt 2461 ctctttcatc tacagctgat cagatgttta ttttacttac attaaatgaa tgatggagat 2521 ccaaagtgaa tattatagaa tattattcta ggatcaacat cttttgcttt gaaaaatcaa 2581 catctcttgg cttttcctca gccaacccag caaacagaga ttatcagact ctgttgattt 2641 tttactttca tttggcattg gcctttttct tactgaaatt aaaaaggcta atgatttgcc 2701 tggtttctgt ctctgacctt tgcaggtcta ttttcttaat ttttagatac tatatatctg 2761 aaactttttt taatgtgtca actttttaat ggatagaaaa tagacacgaa tagtgattat 2821 gtgttcattt ttcaattttc cagaataact gaagtgaagt gatggactcc gatttggaga 2881 gtagtaagac gtgaaaggaa tacacttgtg tttaagcacc atggccttga tgattcactg 2941 ttggggagaa gaaacaagaa aagtaactgg ttgtcaccta tgagaccctt acgtgattgt 3001 tagttaagtt tttattcaaa gcagctgtaa tttagttaat aaaataatta tgatctaaaa 3061 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa agaaaaaaaa aaaaaaaa //