LOCUS BC042864 1771 bp mRNA linear HUM 19-MAR-2009 DEFINITION Homo sapiens SH3-domain GRB2-like 3, mRNA (cDNA clone MGC:50977 IMAGE:5297874), complete cds. ACCESSION BC042864 VERSION BC042864.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1771) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1771) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (02-JAN-2003) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Miklos Palkovits, M.D., Ph.D. cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki Toshiyuki and Piero Carninci (RIKEN) cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Baylor College of Medicine Human Genome Sequencing Center Center code: BCM-HGSC Web site: http://www.hgsc.bcm.tmc.edu/cdna/ Contact: amg@bcm.tmc.edu Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H., Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati, A.N., Gibbs, R.A. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 91 Row: j Column: 9 The stop codon of the CDS annotated on this record is located > 55 bases upstream of a splice junction, and therefore the mRNA is predicted to be subject to nonsense-mediated mRNA decay (NMD). FEATURES Location/Qualifiers source 1..1771 /db_xref="H-InvDB:HIT000052746" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:50977 IMAGE:5297874" /tissue_type="Testis" /clone_lib="NIH_MGC_97" /lab_host="DH10B" /note="Vector: pBluescriptR" gene 1..1771 /gene="SH3GL3" /gene_synonym="CNSA3" /gene_synonym="EEN-2B-L3" /gene_synonym="EEN-B2" /gene_synonym="HsT19371" /gene_synonym="SH3D2C" /gene_synonym="SH3P13" /db_xref="GeneID:6457" /db_xref="HGNC:HGNC:10832" /db_xref="MIM:603362" CDS 148..1014 /gene="SH3GL3" /gene_synonym="CNSA3" /gene_synonym="EEN-2B-L3" /gene_synonym="EEN-B2" /gene_synonym="HsT19371" /gene_synonym="SH3D2C" /gene_synonym="SH3P13" /codon_start=1 /product="SH3GL3 protein" /protein_id="AAH42864.1" /db_xref="GeneID:6457" /db_xref="HGNC:HGNC:10832" /db_xref="MIM:603362" /translation="MSVAGLKKQFHKASQLFSEKISGAEGTKLDDEFLDMERKIDVTN KVVAEILSKTTEYLQPNPAYRAKLGMLNTVSKIRGQVKTTGYPQTEGLLGDCMLKYGK ELGEDSTFGNALIEVGESMKLMAEVKDSLDINVKQTFIDPLQLLQDKDLKEIGHHLKK LEGRRLDYDYKKKRVGKIPDEEVRQAVEKFEESKELAERSMFNFLENDVEQVSQLAVF IEAALDYHRQSTEILQELQSKLQMRISAASSVPRREYKPRPVKRSSSELNGVSTTSVV KTTAYSRLEPAD" BASE COUNT 558 a 368 c 431 g 414 t ORIGIN 1 tggggctgtg gccgtggccg tgggaggcgg gcccggcgga gcccagccgc ggggggaccg 61 gcccgggctc ccgctccccg agcgcgtcgc ggccgcgtgg cccagccgag ccttgagacc 121 accccgcccc tgccggtcgc agtcgcgatg tcggtggccg ggctgaagaa gcagttccac 181 aaagccagcc agctatttag tgaaaaaata agtggtgctg aaggaactaa actagacgat 241 gaatttcttg acatggaaag gaaaatagat gttaccaata aagttgttgc agaaattctt 301 tcaaaaacca ctgaatatct tcagccaaat ccagcataca gagctaagct aggaatgctg 361 aacactgtgt cgaagatccg agggcaggtg aagaccacag gatacccgca gacggaaggc 421 ttgctggggg actgtatgct gaaatacggg aaggagctcg gggaagactc cacctttggc 481 aatgcattga tagaagttgg tgaatccatg aagctaatgg ctgaggtgaa agactctctt 541 gatattaatg taaagcaaac ttttattgat ccacttcagt tactacaaga taaagattta 601 aaagagatcg ggcatcacct gaaaaagctg gaaggccgcc gcctggatta cgattataaa 661 aagaaacgag taggtaagat accagacgaa gaagtcagac aagcggtaga aaaatttgaa 721 gagtcaaagg agttggctga aagaagcatg tttaactttt tagaaaatga tgtagaacaa 781 gtcagccagt tggctgtgtt catagaggca gcattagact atcacagaca gtccacagag 841 attctgcagg agctgcagag caagctacag atgcgaatat cagctgcatc cagtgtcccc 901 agacgagaat acaagccaag gcctgtgaaa aggagttcta gtgagctcaa tggagtttcc 961 accacctctg tagtgaagac gacagcctac agcagactgg aaccagcaga ttaggaaggc 1021 ccaagggact gcttcgggaa ggccattgac agcaggaaaa agtgacaggt cgcagccaga 1081 ctacaaggga ggcaagagaa aaactataaa aagcaggaac aaaaacactc aaaagacaca 1141 gcagtctggg ggatttacta aaagacaaag agccctactc aggttctaac attcccatgg 1201 accagccctg ctgtcgtggt ctctatgact ttgagccaga aaaccaagga gaattaggat 1261 ttaaagaagg ggacatcatt acattaacca atcaaataga tgaaaactgg tatgaaggaa 1321 tgatacacgg agaatcggga ttcttcccca ttaattacgt ggaagtgatc gtgcctttac 1381 ctcagtaaat gtgtaacaca aactctggac atactttcgt aactgaaatg aattcacacc 1441 agtgtgctct cagtgcggtg ttctgtgaca tcctttgctc tctgaccaac ttaatgactt 1501 ttgtatgtgt gctctcttta taatgtattt tatatcactt taatttgtat aaatgatttt 1561 cttgtccttg ctacatgaaa atattgtttt cttttttgct tcctgtccta aaagtcattg 1621 gttaaatgta tttgcttcct gtggctaaaa ataagtctca cccattgcag ttatgtcaac 1681 gaatggccta tattcctcag ctgcaatgaa atggtaacat ttgaaactaa gaaatgctaa 1741 atattttgtt tctcgacaaa aaaaaaaaaa a //