LOCUS BC042864 1771 bp mRNA linear HUM 19-MAR-2009
DEFINITION Homo sapiens SH3-domain GRB2-like 3, mRNA (cDNA clone MGC:50977
IMAGE:5297874), complete cds.
ACCESSION BC042864
VERSION BC042864.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1771)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1771)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-JAN-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 91 Row: j Column: 9
The stop codon of the CDS annotated on this record is located > 55
bases upstream of a splice junction, and therefore the mRNA is
predicted to be subject to nonsense-mediated mRNA decay (NMD).
FEATURES Location/Qualifiers
source 1..1771
/db_xref="H-InvDB:HIT000052746"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:50977 IMAGE:5297874"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..1771
/gene="SH3GL3"
/gene_synonym="CNSA3"
/gene_synonym="EEN-2B-L3"
/gene_synonym="EEN-B2"
/gene_synonym="HsT19371"
/gene_synonym="SH3D2C"
/gene_synonym="SH3P13"
/db_xref="GeneID:6457"
/db_xref="HGNC:HGNC:10832"
/db_xref="MIM:603362"
CDS 148..1014
/gene="SH3GL3"
/gene_synonym="CNSA3"
/gene_synonym="EEN-2B-L3"
/gene_synonym="EEN-B2"
/gene_synonym="HsT19371"
/gene_synonym="SH3D2C"
/gene_synonym="SH3P13"
/codon_start=1
/product="SH3GL3 protein"
/protein_id="AAH42864.1"
/db_xref="GeneID:6457"
/db_xref="HGNC:HGNC:10832"
/db_xref="MIM:603362"
/translation="MSVAGLKKQFHKASQLFSEKISGAEGTKLDDEFLDMERKIDVTN
KVVAEILSKTTEYLQPNPAYRAKLGMLNTVSKIRGQVKTTGYPQTEGLLGDCMLKYGK
ELGEDSTFGNALIEVGESMKLMAEVKDSLDINVKQTFIDPLQLLQDKDLKEIGHHLKK
LEGRRLDYDYKKKRVGKIPDEEVRQAVEKFEESKELAERSMFNFLENDVEQVSQLAVF
IEAALDYHRQSTEILQELQSKLQMRISAASSVPRREYKPRPVKRSSSELNGVSTTSVV
KTTAYSRLEPAD"
BASE COUNT 558 a 368 c 431 g 414 t
ORIGIN
1 tggggctgtg gccgtggccg tgggaggcgg gcccggcgga gcccagccgc ggggggaccg
61 gcccgggctc ccgctccccg agcgcgtcgc ggccgcgtgg cccagccgag ccttgagacc
121 accccgcccc tgccggtcgc agtcgcgatg tcggtggccg ggctgaagaa gcagttccac
181 aaagccagcc agctatttag tgaaaaaata agtggtgctg aaggaactaa actagacgat
241 gaatttcttg acatggaaag gaaaatagat gttaccaata aagttgttgc agaaattctt
301 tcaaaaacca ctgaatatct tcagccaaat ccagcataca gagctaagct aggaatgctg
361 aacactgtgt cgaagatccg agggcaggtg aagaccacag gatacccgca gacggaaggc
421 ttgctggggg actgtatgct gaaatacggg aaggagctcg gggaagactc cacctttggc
481 aatgcattga tagaagttgg tgaatccatg aagctaatgg ctgaggtgaa agactctctt
541 gatattaatg taaagcaaac ttttattgat ccacttcagt tactacaaga taaagattta
601 aaagagatcg ggcatcacct gaaaaagctg gaaggccgcc gcctggatta cgattataaa
661 aagaaacgag taggtaagat accagacgaa gaagtcagac aagcggtaga aaaatttgaa
721 gagtcaaagg agttggctga aagaagcatg tttaactttt tagaaaatga tgtagaacaa
781 gtcagccagt tggctgtgtt catagaggca gcattagact atcacagaca gtccacagag
841 attctgcagg agctgcagag caagctacag atgcgaatat cagctgcatc cagtgtcccc
901 agacgagaat acaagccaag gcctgtgaaa aggagttcta gtgagctcaa tggagtttcc
961 accacctctg tagtgaagac gacagcctac agcagactgg aaccagcaga ttaggaaggc
1021 ccaagggact gcttcgggaa ggccattgac agcaggaaaa agtgacaggt cgcagccaga
1081 ctacaaggga ggcaagagaa aaactataaa aagcaggaac aaaaacactc aaaagacaca
1141 gcagtctggg ggatttacta aaagacaaag agccctactc aggttctaac attcccatgg
1201 accagccctg ctgtcgtggt ctctatgact ttgagccaga aaaccaagga gaattaggat
1261 ttaaagaagg ggacatcatt acattaacca atcaaataga tgaaaactgg tatgaaggaa
1321 tgatacacgg agaatcggga ttcttcccca ttaattacgt ggaagtgatc gtgcctttac
1381 ctcagtaaat gtgtaacaca aactctggac atactttcgt aactgaaatg aattcacacc
1441 agtgtgctct cagtgcggtg ttctgtgaca tcctttgctc tctgaccaac ttaatgactt
1501 ttgtatgtgt gctctcttta taatgtattt tatatcactt taatttgtat aaatgatttt
1561 cttgtccttg ctacatgaaa atattgtttt cttttttgct tcctgtccta aaagtcattg
1621 gttaaatgta tttgcttcct gtggctaaaa ataagtctca cccattgcag ttatgtcaac
1681 gaatggccta tattcctcag ctgcaatgaa atggtaacat ttgaaactaa gaaatgctaa
1741 atattttgtt tctcgacaaa aaaaaaaaaa a
//