LOCUS BC041862 2525 bp mRNA linear HUM 17-JUL-2006 DEFINITION Homo sapiens ATG4 autophagy related 4 homolog A (S. cerevisiae), mRNA (cDNA clone MGC:43691 IMAGE:5271295), complete cds. ACCESSION BC041862 VERSION BC041862.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2525) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2525) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (23-DEC-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Miklos Palkovits, M.D., Ph.D. cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki Toshiyuki and Piero Carninci (RIKEN) cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 74 Row: n Column: 24 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 30795249. FEATURES Location/Qualifiers source 1..2525 /db_xref="H-InvDB:HIT000052630" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:43691 IMAGE:5271295" /tissue_type="Testis" /clone_lib="NIH_MGC_97" /lab_host="DH10B" /note="Vector: pBluescriptR" gene 1..2525 /gene="ATG4A" /db_xref="GeneID:115201" /db_xref="HGNC:HGNC:16489" CDS 577..1542 /gene="ATG4A" /codon_start=1 /product="ATG4 autophagy related 4 homolog A (S. cerevisiae)" /protein_id="AAH41862.1" /db_xref="GeneID:115201" /db_xref="HGNC:HGNC:16489" /translation="MLRCGQMMLAQALICRHLGRDWSWEKQKEQPKEYQRILQCFLDR KDCCYSIHQMAQMGVGEGKSIGEWFGPNTVAQVLKKLALFDEWNSLAVYVSMDNTVVI EDIKKMCRVLPLSADTAGDRPPDSLTASNQSKGTSAYCSAWKPLLLIVPLRLGINQIN PVYVDAFKECFKMPQSLGALGGKPNNAYYFIGFLGDELIFLDPHTTQTFVDTEENGTV NDQTFHCLQSPQRMNILNLDPSVALGFFCKEEKDFDNWCSLVQKEILKENLRMFELVQ KHPSHWPPFVPPAKPEVTTTGAEFIDSTEQLEEFDLEEDFEILSV" BASE COUNT 782 a 494 c 568 g 681 t ORIGIN 1 agtctagttg ccggtggaat tggcccagga tgacagctgg agaatggagt cagttttatc 61 caagtatgaa gatcagatta ctattttcac tgactaccta gaagaatatc cagatacaga 121 tgagctggta tggatcttag ggaagcagca tctccttaaa acagattggg aaagaaagac 181 cttttaacct gaaactgcta acagcccagc acccagataa agccagagct tggaaagagg 241 cagctctgag atttgtgtct ttctgaggag acatcctctt cagaggccct cacttagcgt 301 ggaggaagga acaggaagag gctgatgaaa aggcaggaga ggaagttagg cattgtggag 361 ctcctcctga gccaggcttc attattttga ttggagaatt ctgaacagtg gaaagcctgg 421 agctagcaat taggagacct tttgtattca gactcttcta actcagaaaa atctaagctg 481 ttgtctgatg taagtgctcg tctatggttt acatacagaa ggaaattttc accaattggt 541 ggaacgggcc cttcatcaga tgctggttgg ggatgtatgc tacgctgtgg acagatgatg 601 ctggctcaag cccttatctg tagacacttg ggaagggact ggagctggga gaaacaaaaa 661 gaacaaccca aagaatacca acgcatccta cagtgcttct tagatagaaa agattgttgc 721 tactctatcc atcaaatggc acaaatgggt gtaggagaag ggaaatcaat tggagaatgg 781 tttggaccaa atacagttgc acaggtgtta aaaaaacttg ctttatttga cgaatggaat 841 tccttggctg tttatgtttc aatggataac acagtggtca ttgaagatat caaaaaaatg 901 tgccgtgtcc ttcccttgag tgctgacaca gctggtgaca ggcctcccga ttctttaact 961 gcttcaaacc agagtaaggg cacctctgcc tactgctcag cctggaaacc cctgctgctc 1021 attgtgcccc ttcgcctggg cataaaccaa atcaatcctg tctatgttga tgcattcaaa 1081 gagtgtttta agatgccaca gtctttaggg gcattaggag gaaaaccaaa taacgcgtat 1141 tatttcatag gattcttagg tgacgagctc atcttcttgg accctcatac aacccagacc 1201 tttgttgaca ctgaagagaa tggaacggtt aatgaccaga ctttccattg cctgcagtcc 1261 ccacagcgaa tgaacatcct aaacctggat ccttcagttg cattgggatt tttctgcaaa 1321 gaagaaaaag actttgataa ctggtgtagc cttgttcaga aggaaattct aaaggagaat 1381 ttaaggatgt ttgaattagt tcagaaacat ccatcacact ggcctccctt tgtacctcca 1441 gccaagccag aagtgacaac cactggggca gaattcattg actctactga gcaactggag 1501 gagtttgatc tggaggaaga ttttgagatt ctgagtgtgt agaatcctgg gaactcaact 1561 tgaaggtctg tcttccatct ggcaccataa aaacatgaac ttattgcata aaacttttct 1621 agtcagcaag tgcctgatat gccaatagca tacaaactca atagcaatca tgactgagcc 1681 aatcactgtt tctcagaaaa acaaaacaaa acaaaacaaa tgacagtaac ccttccccgg 1741 aaagaaatag aacaatcatg gagcctagga gcagagagat gaggaggagt tcattgcttc 1801 ccagcttgtg ttatatggct acagcaagtc ttcagctgct gcaatgagga aatgggcatc 1861 tggaagacaa acagcaactc tcagcttgct tcaagaacca gcagataaga gatggttaag 1921 ctgttcttca ccctttcaga tgtgacctct tttggactaa gcagcaatct gttctcttgc 1981 tcaaataata aagtgactga atcagggagg aaaaggttct tgttaaatta tttgattgtg 2041 tagttgaagt aattataatt tatatcaaaa cgtttgtcaa agaaacgatg tcaaatatac 2101 acttcttgat ctcccttctg tttgcgggga tcttactatt tgatgggtca ctgtccccat 2161 tcttactgat acttttgtca gatatcaccc tgtccttaaa tcatgatcac ttaaatcagg 2221 ggtcagcaaa ctttttctgt aaagggccag acgggaaata ttttgggctt tgcaggccat 2281 gcggcctctg tcacatctac tcaactctgc tgttgacatg caaaagcagc aatagacaat 2341 atgcgtgtaa atgagtgtgg ctgtaatcca agaaaacttt atttacaaaa gcaggtggag 2401 ggctgggttt ggcctgcagg ctgtagcttg gcaatcagtg acttaaattg ttgatttttg 2461 tttgataaat taaaaataaa ttgtgtttga agtataaaaa aaaaaaaaga aaaaaaaaaa 2521 aaaaa //