LOCUS BC041862 2525 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens ATG4 autophagy related 4 homolog A (S. cerevisiae),
mRNA (cDNA clone MGC:43691 IMAGE:5271295), complete cds.
ACCESSION BC041862
VERSION BC041862.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2525)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2525)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (23-DEC-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 74 Row: n Column: 24
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 30795249.
FEATURES Location/Qualifiers
source 1..2525
/db_xref="H-InvDB:HIT000052630"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:43691 IMAGE:5271295"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..2525
/gene="ATG4A"
/db_xref="GeneID:115201"
/db_xref="HGNC:HGNC:16489"
CDS 577..1542
/gene="ATG4A"
/codon_start=1
/product="ATG4 autophagy related 4 homolog A (S.
cerevisiae)"
/protein_id="AAH41862.1"
/db_xref="GeneID:115201"
/db_xref="HGNC:HGNC:16489"
/translation="MLRCGQMMLAQALICRHLGRDWSWEKQKEQPKEYQRILQCFLDR
KDCCYSIHQMAQMGVGEGKSIGEWFGPNTVAQVLKKLALFDEWNSLAVYVSMDNTVVI
EDIKKMCRVLPLSADTAGDRPPDSLTASNQSKGTSAYCSAWKPLLLIVPLRLGINQIN
PVYVDAFKECFKMPQSLGALGGKPNNAYYFIGFLGDELIFLDPHTTQTFVDTEENGTV
NDQTFHCLQSPQRMNILNLDPSVALGFFCKEEKDFDNWCSLVQKEILKENLRMFELVQ
KHPSHWPPFVPPAKPEVTTTGAEFIDSTEQLEEFDLEEDFEILSV"
BASE COUNT 782 a 494 c 568 g 681 t
ORIGIN
1 agtctagttg ccggtggaat tggcccagga tgacagctgg agaatggagt cagttttatc
61 caagtatgaa gatcagatta ctattttcac tgactaccta gaagaatatc cagatacaga
121 tgagctggta tggatcttag ggaagcagca tctccttaaa acagattggg aaagaaagac
181 cttttaacct gaaactgcta acagcccagc acccagataa agccagagct tggaaagagg
241 cagctctgag atttgtgtct ttctgaggag acatcctctt cagaggccct cacttagcgt
301 ggaggaagga acaggaagag gctgatgaaa aggcaggaga ggaagttagg cattgtggag
361 ctcctcctga gccaggcttc attattttga ttggagaatt ctgaacagtg gaaagcctgg
421 agctagcaat taggagacct tttgtattca gactcttcta actcagaaaa atctaagctg
481 ttgtctgatg taagtgctcg tctatggttt acatacagaa ggaaattttc accaattggt
541 ggaacgggcc cttcatcaga tgctggttgg ggatgtatgc tacgctgtgg acagatgatg
601 ctggctcaag cccttatctg tagacacttg ggaagggact ggagctggga gaaacaaaaa
661 gaacaaccca aagaatacca acgcatccta cagtgcttct tagatagaaa agattgttgc
721 tactctatcc atcaaatggc acaaatgggt gtaggagaag ggaaatcaat tggagaatgg
781 tttggaccaa atacagttgc acaggtgtta aaaaaacttg ctttatttga cgaatggaat
841 tccttggctg tttatgtttc aatggataac acagtggtca ttgaagatat caaaaaaatg
901 tgccgtgtcc ttcccttgag tgctgacaca gctggtgaca ggcctcccga ttctttaact
961 gcttcaaacc agagtaaggg cacctctgcc tactgctcag cctggaaacc cctgctgctc
1021 attgtgcccc ttcgcctggg cataaaccaa atcaatcctg tctatgttga tgcattcaaa
1081 gagtgtttta agatgccaca gtctttaggg gcattaggag gaaaaccaaa taacgcgtat
1141 tatttcatag gattcttagg tgacgagctc atcttcttgg accctcatac aacccagacc
1201 tttgttgaca ctgaagagaa tggaacggtt aatgaccaga ctttccattg cctgcagtcc
1261 ccacagcgaa tgaacatcct aaacctggat ccttcagttg cattgggatt tttctgcaaa
1321 gaagaaaaag actttgataa ctggtgtagc cttgttcaga aggaaattct aaaggagaat
1381 ttaaggatgt ttgaattagt tcagaaacat ccatcacact ggcctccctt tgtacctcca
1441 gccaagccag aagtgacaac cactggggca gaattcattg actctactga gcaactggag
1501 gagtttgatc tggaggaaga ttttgagatt ctgagtgtgt agaatcctgg gaactcaact
1561 tgaaggtctg tcttccatct ggcaccataa aaacatgaac ttattgcata aaacttttct
1621 agtcagcaag tgcctgatat gccaatagca tacaaactca atagcaatca tgactgagcc
1681 aatcactgtt tctcagaaaa acaaaacaaa acaaaacaaa tgacagtaac ccttccccgg
1741 aaagaaatag aacaatcatg gagcctagga gcagagagat gaggaggagt tcattgcttc
1801 ccagcttgtg ttatatggct acagcaagtc ttcagctgct gcaatgagga aatgggcatc
1861 tggaagacaa acagcaactc tcagcttgct tcaagaacca gcagataaga gatggttaag
1921 ctgttcttca ccctttcaga tgtgacctct tttggactaa gcagcaatct gttctcttgc
1981 tcaaataata aagtgactga atcagggagg aaaaggttct tgttaaatta tttgattgtg
2041 tagttgaagt aattataatt tatatcaaaa cgtttgtcaa agaaacgatg tcaaatatac
2101 acttcttgat ctcccttctg tttgcgggga tcttactatt tgatgggtca ctgtccccat
2161 tcttactgat acttttgtca gatatcaccc tgtccttaaa tcatgatcac ttaaatcagg
2221 ggtcagcaaa ctttttctgt aaagggccag acgggaaata ttttgggctt tgcaggccat
2281 gcggcctctg tcacatctac tcaactctgc tgttgacatg caaaagcagc aatagacaat
2341 atgcgtgtaa atgagtgtgg ctgtaatcca agaaaacttt atttacaaaa gcaggtggag
2401 ggctgggttt ggcctgcagg ctgtagcttg gcaatcagtg acttaaattg ttgatttttg
2461 tttgataaat taaaaataaa ttgtgtttga agtataaaaa aaaaaaaaga aaaaaaaaaa
2521 aaaaa
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