LOCUS BC041640 1478 bp mRNA linear HUM 07-OCT-2003 DEFINITION Homo sapiens Bernardinelli-Seip congenital lipodystrophy 2 (seipin), mRNA (cDNA clone MGC:52445 IMAGE:5089532), complete cds. ACCESSION BC041640 VERSION BC041640.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1478) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1478) AUTHORS Strausberg,R. TITLE Direct Submission JOURNAL Submitted (20-DEC-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Cancer Genomics Office, National Cancer Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 44 Row: h Column: 13 This clone was selected for full length sequencing because it passed the following selection criteria: Hexamer frequency ORF analysis. FEATURES Location/Qualifiers source 1..1478 /db_xref="H-InvDB:HIT000052583" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:52445 IMAGE:5089532" /tissue_type="Pancreas, epithelioid carcinoma" /clone_lib="NIH_MGC_42" /lab_host="DH10B-R" /note="Vector: pOTB7" gene 1..1478 /gene="BSCL2" /gene_synonym="GNG3LG" /gene_synonym="MGC4694" /gene_synonym="SEIPIN" /db_xref="GeneID:26580" /db_xref="MIM:606158" CDS 171..1367 /gene="BSCL2" /gene_synonym="GNG3LG" /gene_synonym="MGC4694" /gene_synonym="SEIPIN" /codon_start=1 /product="BSCL2 protein" /protein_id="AAH41640.1" /db_xref="GeneID:26580" /db_xref="MIM:606158" /translation="MVNDPPVPALLWAQEVGQVLAGRARRLLLQFGVLFCTILLLLWV SVFLYGSFYYSYMPTVSHLSPVHFYYRTDCDSSTTSLCSFPVANVSLTKGGRDRVLMY GQPYRVTLELELPESPVNQDLGMFLVTISCYTRGGRIISTSSRSVMLHYRSDLLQMLD TLVFSSLLLFGFAEQKQLLEVELYADYRENSYVPTTGAIIEIHSKRIQLYGAYLRIHA HFTGLRYLLYNFPMTCAFIGVASNFTFLSVIVLFSYMQWVWGGIWPRHRFSLQVNIRK RDNSRKEVQRRISAHQPGPEGQEESTPQSDVTEDGESPEDPSGTEGQLSEEEKPDQQP LSGEEELEPEASDGSGSWEDAALLTEANLPAPAPASASAPVLETLGSSEPAGGALRQR PTCSSS" BASE COUNT 304 a 443 c 389 g 342 t ORIGIN 1 gcgaggctgg tgagtcggca gccctgtggc agccggcggg ctggtttcca tggttgcacg 61 attaggaacc accagctgct gcatcccatg gccaggggtg gcgtccaggt ggcagagcag 121 ctaggaacgc aaggcctgaa cctggggcca gacaccctgc tctcccggcc atggtcaacg 181 accctccagt acctgcctta ctgtgggccc aggaggtggg ccaagtcttg gcaggccgtg 241 cccgcaggct gctgctgcag tttggggtgc tcttctgcac catcctcctt ttgctctggg 301 tgtctgtctt cctctatggc tccttctact attcctatat gccgacagtc agccacctca 361 gccctgtgca tttctactac aggaccgact gtgattcctc caccacctca ctctgctcct 421 tccctgttgc caatgtctcg ctgactaagg gtggacgtga tcgggtgctg atgtatggac 481 agccgtatcg tgttacctta gagcttgagc tgccagagtc ccctgtgaat caagatttgg 541 gcatgttctt ggtcaccatt tcctgctaca ccagaggtgg ccgaatcatc tccacttctt 601 cgcgttcggt gatgctgcat taccgctcag acctgctcca gatgctggac acactggtct 661 tctctagcct cctgctattt ggctttgcag agcagaagca gctgctggag gtggaactct 721 acgcagacta tagagagaac tcgtacgtgc cgaccactgg agcgatcatt gagatccaca 781 gcaagcgcat ccagctgtat ggagcctacc tccgcatcca cgcgcacttc actgggctca 841 gatacctgct atacaacttc ccgatgacct gcgccttcat aggtgttgcc agcaacttca 901 ccttcctcag cgtcatcgtg ctcttcagct acatgcagtg ggtgtggggg ggcatctggc 961 cccgacaccg cttctctttg caggttaaca tccgaaaaag agacaattcc cggaaggaag 1021 tccaacgaag gatctctgct catcagccag ggcctgaagg ccaggaggag tcaactccgc 1081 aatcagatgt tacagaggat ggtgagagcc ctgaagatcc ctcagggaca gagggtcagc 1141 tgtccgagga ggagaaacca gatcagcagc ccctgagcgg agaagaggag ctagagcctg 1201 aggccagtga tggttcaggc tcctgggaag atgcagcttt gctgacggag gccaacctgc 1261 ctgctcctgc tcctgcttct gcttctgccc ctgtcctaga gactctgggc agctctgaac 1321 ctgctggggg tgctctccga cagcgcccca cctgctctag ttcctgaaga aaaggggcag 1381 actcctcaca ttccagcact ttcccacctg actcctctcc cctcgttttt ccttcaataa 1441 actattttgt gtcagcttca aaaaaaaaaa aaaaaaaa //