LOCUS BC041640 1478 bp mRNA linear HUM 07-OCT-2003
DEFINITION Homo sapiens Bernardinelli-Seip congenital lipodystrophy 2
(seipin), mRNA (cDNA clone MGC:52445 IMAGE:5089532), complete cds.
ACCESSION BC041640
VERSION BC041640.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1478)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1478)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (20-DEC-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 44 Row: h Column: 13
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis.
FEATURES Location/Qualifiers
source 1..1478
/db_xref="H-InvDB:HIT000052583"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:52445 IMAGE:5089532"
/tissue_type="Pancreas, epithelioid carcinoma"
/clone_lib="NIH_MGC_42"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1478
/gene="BSCL2"
/gene_synonym="GNG3LG"
/gene_synonym="MGC4694"
/gene_synonym="SEIPIN"
/db_xref="GeneID:26580"
/db_xref="MIM:606158"
CDS 171..1367
/gene="BSCL2"
/gene_synonym="GNG3LG"
/gene_synonym="MGC4694"
/gene_synonym="SEIPIN"
/codon_start=1
/product="BSCL2 protein"
/protein_id="AAH41640.1"
/db_xref="GeneID:26580"
/db_xref="MIM:606158"
/translation="MVNDPPVPALLWAQEVGQVLAGRARRLLLQFGVLFCTILLLLWV
SVFLYGSFYYSYMPTVSHLSPVHFYYRTDCDSSTTSLCSFPVANVSLTKGGRDRVLMY
GQPYRVTLELELPESPVNQDLGMFLVTISCYTRGGRIISTSSRSVMLHYRSDLLQMLD
TLVFSSLLLFGFAEQKQLLEVELYADYRENSYVPTTGAIIEIHSKRIQLYGAYLRIHA
HFTGLRYLLYNFPMTCAFIGVASNFTFLSVIVLFSYMQWVWGGIWPRHRFSLQVNIRK
RDNSRKEVQRRISAHQPGPEGQEESTPQSDVTEDGESPEDPSGTEGQLSEEEKPDQQP
LSGEEELEPEASDGSGSWEDAALLTEANLPAPAPASASAPVLETLGSSEPAGGALRQR
PTCSSS"
BASE COUNT 304 a 443 c 389 g 342 t
ORIGIN
1 gcgaggctgg tgagtcggca gccctgtggc agccggcggg ctggtttcca tggttgcacg
61 attaggaacc accagctgct gcatcccatg gccaggggtg gcgtccaggt ggcagagcag
121 ctaggaacgc aaggcctgaa cctggggcca gacaccctgc tctcccggcc atggtcaacg
181 accctccagt acctgcctta ctgtgggccc aggaggtggg ccaagtcttg gcaggccgtg
241 cccgcaggct gctgctgcag tttggggtgc tcttctgcac catcctcctt ttgctctggg
301 tgtctgtctt cctctatggc tccttctact attcctatat gccgacagtc agccacctca
361 gccctgtgca tttctactac aggaccgact gtgattcctc caccacctca ctctgctcct
421 tccctgttgc caatgtctcg ctgactaagg gtggacgtga tcgggtgctg atgtatggac
481 agccgtatcg tgttacctta gagcttgagc tgccagagtc ccctgtgaat caagatttgg
541 gcatgttctt ggtcaccatt tcctgctaca ccagaggtgg ccgaatcatc tccacttctt
601 cgcgttcggt gatgctgcat taccgctcag acctgctcca gatgctggac acactggtct
661 tctctagcct cctgctattt ggctttgcag agcagaagca gctgctggag gtggaactct
721 acgcagacta tagagagaac tcgtacgtgc cgaccactgg agcgatcatt gagatccaca
781 gcaagcgcat ccagctgtat ggagcctacc tccgcatcca cgcgcacttc actgggctca
841 gatacctgct atacaacttc ccgatgacct gcgccttcat aggtgttgcc agcaacttca
901 ccttcctcag cgtcatcgtg ctcttcagct acatgcagtg ggtgtggggg ggcatctggc
961 cccgacaccg cttctctttg caggttaaca tccgaaaaag agacaattcc cggaaggaag
1021 tccaacgaag gatctctgct catcagccag ggcctgaagg ccaggaggag tcaactccgc
1081 aatcagatgt tacagaggat ggtgagagcc ctgaagatcc ctcagggaca gagggtcagc
1141 tgtccgagga ggagaaacca gatcagcagc ccctgagcgg agaagaggag ctagagcctg
1201 aggccagtga tggttcaggc tcctgggaag atgcagcttt gctgacggag gccaacctgc
1261 ctgctcctgc tcctgcttct gcttctgccc ctgtcctaga gactctgggc agctctgaac
1321 ctgctggggg tgctctccga cagcgcccca cctgctctag ttcctgaaga aaaggggcag
1381 actcctcaca ttccagcact ttcccacctg actcctctcc cctcgttttt ccttcaataa
1441 actattttgt gtcagcttca aaaaaaaaaa aaaaaaaa
//