LOCUS BC040844 1941 bp mRNA linear HUM 11-DEC-2003 DEFINITION Homo sapiens synaptotagmin binding, cytoplasmic RNA interacting protein, mRNA (cDNA clone MGC:49819 IMAGE:4513184), complete cds. ACCESSION BC040844 VERSION BC040844.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1941) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1941) AUTHORS Strausberg,R. TITLE Direct Submission JOURNAL Submitted (06-DEC-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Cancer Genomics Office, National Cancer Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 88 Row: b Column: 23 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 23397426. FEATURES Location/Qualifiers source 1..1941 /db_xref="H-InvDB:HIT000052452" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:49819 IMAGE:4513184" /tissue_type="Bladder, transitional cell papilloma" /clone_lib="NIH_MGC_93" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..1941 /gene="SYNCRIP" /gene_synonym="dJ3J17.2" /gene_synonym="GRY-RBP" /gene_synonym="NSAP1" /gene_synonym="pp68" /db_xref="GeneID:10492" CDS 377..1609 /gene="SYNCRIP" /gene_synonym="dJ3J17.2" /gene_synonym="GRY-RBP" /gene_synonym="NSAP1" /gene_synonym="pp68" /codon_start=1 /product="SYNCRIP protein" /protein_id="AAH40844.1" /db_xref="GeneID:10492" /translation="MEDHLQIPFIQIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMD PLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSK TKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGSCFLEYEDHKTAAQARRRLMSGKVK VWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMY DDYYYYGPPHMPPPTRGRGRGGRGGYGYPPDYYGYEDYYDYYGYDYHNYRGGYEDPYY GYEDFQVGARGRGGRGARGAAPSRGRGAAPPRGRAGYSQRGGPGSARGVRGARGGAQQ QRGRGQGKGVEAGPDLLQ" misc_feature 410..628 /gene="SYNCRIP" /gene_synonym="dJ3J17.2" /gene_synonym="GRY-RBP" /gene_synonym="NSAP1" /gene_synonym="pp68" /note="RRM; Region: RNA recognition motif" /db_xref="CDD:smart00360" misc_feature 650..838 /gene="SYNCRIP" /gene_synonym="dJ3J17.2" /gene_synonym="GRY-RBP" /gene_synonym="NSAP1" /gene_synonym="pp68" /note="RRM; Region: RNA recognition motif" /db_xref="CDD:smart00360" misc_feature 935..1129 /gene="SYNCRIP" /gene_synonym="dJ3J17.2" /gene_synonym="GRY-RBP" /gene_synonym="NSAP1" /gene_synonym="pp68" /note="RRM; Region: RNA recognition motif" /db_xref="CDD:smart00360" BASE COUNT 635 a 339 c 478 g 489 t ORIGIN 1 ctccactcgc gccggacaca gggagcagcg agcacgcgtt tcccgcaacc cgataccatc 61 ggacaggatt tctccgcctc agcccaacgg ggagggctag ttgcacatag tgatttagat 121 gaaagagcta ttgaagcttt aaaagaattc aatgaagacg gtgcattggc agttcttcaa 181 cagtttaaag acagtgatct ctctcatgtt cagaacaaaa gtgccttttt atgtggagtc 241 atgaagactt acaggcagag agaaaaacaa gggaccaaag tagcagattc tagtaaagga 301 ccagatgagg caaaaattaa ggcactcttg gaaagaacag gctacacact tgatgtgacc 361 actggacaga ggaagtatgg aggaccacct ccagattccg tttattcaga tatttgtggg 421 aaagatccca agagatctat ttgaggatga acttgttcca ttatttgaga aagctggacc 481 tatatgggat cttcgtctaa tgatggatcc actcactggt ctcaatagag gttatgcgtt 541 tgtcactttt tgtacaaaag aagcagctca ggaggctgtt aaactgtata ataatcatga 601 aattcgttct ggaaaacata ttggtgtctg catctcagtt gccaacaata ggctttttgt 661 gggctctatt cctaagagta aaaccaagga acagattctt gaagaattta gcaaagtaac 721 agagggtctt acagacgtca ttttatacca ccaaccggat gacaagaaaa aaaacagagg 781 ctcttgcttt cttgaatatg aagatcacaa aacagctgcc caggcaaggc gtaggttaat 841 gagtggtaaa gtcaaggtct gggggaatgt tggaactgtt gaatgggctg atcctataga 901 agatcctgat cctgaggtta tggcaaaggt aaaagtgctg tttgtacgca accttgccaa 961 tactgtaaca gaagagattt tagaaaaggc atttagtcag tttgggaaac tggaacgagt 1021 gaagaagtta aaagattatg cgttcattca ttttgatgag cgagatggtg ctgtcaaggc 1081 tatggaagaa atgaatggca aagacttgga gggagaaaat attgaaattg tttttgccaa 1141 gccaccagat cagaaaagga aagaaagaaa agctcagagg caagcagcaa aaaatcaaat 1201 gtatgacgat tactactatt atggtccacc tcatatgccc cctccaacaa gaggtcgagg 1261 gcgtggaggt agaggtggtt atggatatcc tccagattat tatggatatg aagattatta 1321 tgattattat ggttatgatt accataacta tcgtggtgga tatgaagatc catactatgg 1381 ttatgaagat tttcaagttg gagctagagg aaggggtggt agaggagcaa ggggtgctgc 1441 tccatccaga ggtcgtgggg ctgctcctcc ccgcggtaga gccggttatt cacagagagg 1501 aggtcctgga tcagcaagag gcgttcgagg tgcgagagga ggtgcccaac aacaaagagg 1561 ccgcgggcag ggaaaagggg tcgaggccgg tcctgacctg ttacaatgaa gactgacttg 1621 ctatgtggga ttacaccaga agcttgcagt ggagtaatgg taaggaaatc aagcaacctt 1681 aaatatgtcg gctgtatagg agcatattct attgcagaag accttcctat gaagatcatg 1741 gaatcaaata cgggacattg aactaatact tggactttga tatgaatttc tttaacaatt 1801 ttctctgcag tgcaagttat taaactaaag ctactctatt ttcaaaatgt gttccaacag 1861 aaatccttca taactcctag catggtatct taataaagaa taaagttctt ttaaaaaaaa 1921 aaaaaaaaaa aaaaaaaaaa a //