LOCUS BC040844 1941 bp mRNA linear HUM 11-DEC-2003
DEFINITION Homo sapiens synaptotagmin binding, cytoplasmic RNA interacting
protein, mRNA (cDNA clone MGC:49819 IMAGE:4513184), complete cds.
ACCESSION BC040844
VERSION BC040844.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1941)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1941)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (06-DEC-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 88 Row: b Column: 23
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 23397426.
FEATURES Location/Qualifiers
source 1..1941
/db_xref="H-InvDB:HIT000052452"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:49819 IMAGE:4513184"
/tissue_type="Bladder, transitional cell papilloma"
/clone_lib="NIH_MGC_93"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1941
/gene="SYNCRIP"
/gene_synonym="dJ3J17.2"
/gene_synonym="GRY-RBP"
/gene_synonym="NSAP1"
/gene_synonym="pp68"
/db_xref="GeneID:10492"
CDS 377..1609
/gene="SYNCRIP"
/gene_synonym="dJ3J17.2"
/gene_synonym="GRY-RBP"
/gene_synonym="NSAP1"
/gene_synonym="pp68"
/codon_start=1
/product="SYNCRIP protein"
/protein_id="AAH40844.1"
/db_xref="GeneID:10492"
/translation="MEDHLQIPFIQIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMD
PLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSK
TKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGSCFLEYEDHKTAAQARRRLMSGKVK
VWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL
KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMY
DDYYYYGPPHMPPPTRGRGRGGRGGYGYPPDYYGYEDYYDYYGYDYHNYRGGYEDPYY
GYEDFQVGARGRGGRGARGAAPSRGRGAAPPRGRAGYSQRGGPGSARGVRGARGGAQQ
QRGRGQGKGVEAGPDLLQ"
misc_feature 410..628
/gene="SYNCRIP"
/gene_synonym="dJ3J17.2"
/gene_synonym="GRY-RBP"
/gene_synonym="NSAP1"
/gene_synonym="pp68"
/note="RRM; Region: RNA recognition motif"
/db_xref="CDD:smart00360"
misc_feature 650..838
/gene="SYNCRIP"
/gene_synonym="dJ3J17.2"
/gene_synonym="GRY-RBP"
/gene_synonym="NSAP1"
/gene_synonym="pp68"
/note="RRM; Region: RNA recognition motif"
/db_xref="CDD:smart00360"
misc_feature 935..1129
/gene="SYNCRIP"
/gene_synonym="dJ3J17.2"
/gene_synonym="GRY-RBP"
/gene_synonym="NSAP1"
/gene_synonym="pp68"
/note="RRM; Region: RNA recognition motif"
/db_xref="CDD:smart00360"
BASE COUNT 635 a 339 c 478 g 489 t
ORIGIN
1 ctccactcgc gccggacaca gggagcagcg agcacgcgtt tcccgcaacc cgataccatc
61 ggacaggatt tctccgcctc agcccaacgg ggagggctag ttgcacatag tgatttagat
121 gaaagagcta ttgaagcttt aaaagaattc aatgaagacg gtgcattggc agttcttcaa
181 cagtttaaag acagtgatct ctctcatgtt cagaacaaaa gtgccttttt atgtggagtc
241 atgaagactt acaggcagag agaaaaacaa gggaccaaag tagcagattc tagtaaagga
301 ccagatgagg caaaaattaa ggcactcttg gaaagaacag gctacacact tgatgtgacc
361 actggacaga ggaagtatgg aggaccacct ccagattccg tttattcaga tatttgtggg
421 aaagatccca agagatctat ttgaggatga acttgttcca ttatttgaga aagctggacc
481 tatatgggat cttcgtctaa tgatggatcc actcactggt ctcaatagag gttatgcgtt
541 tgtcactttt tgtacaaaag aagcagctca ggaggctgtt aaactgtata ataatcatga
601 aattcgttct ggaaaacata ttggtgtctg catctcagtt gccaacaata ggctttttgt
661 gggctctatt cctaagagta aaaccaagga acagattctt gaagaattta gcaaagtaac
721 agagggtctt acagacgtca ttttatacca ccaaccggat gacaagaaaa aaaacagagg
781 ctcttgcttt cttgaatatg aagatcacaa aacagctgcc caggcaaggc gtaggttaat
841 gagtggtaaa gtcaaggtct gggggaatgt tggaactgtt gaatgggctg atcctataga
901 agatcctgat cctgaggtta tggcaaaggt aaaagtgctg tttgtacgca accttgccaa
961 tactgtaaca gaagagattt tagaaaaggc atttagtcag tttgggaaac tggaacgagt
1021 gaagaagtta aaagattatg cgttcattca ttttgatgag cgagatggtg ctgtcaaggc
1081 tatggaagaa atgaatggca aagacttgga gggagaaaat attgaaattg tttttgccaa
1141 gccaccagat cagaaaagga aagaaagaaa agctcagagg caagcagcaa aaaatcaaat
1201 gtatgacgat tactactatt atggtccacc tcatatgccc cctccaacaa gaggtcgagg
1261 gcgtggaggt agaggtggtt atggatatcc tccagattat tatggatatg aagattatta
1321 tgattattat ggttatgatt accataacta tcgtggtgga tatgaagatc catactatgg
1381 ttatgaagat tttcaagttg gagctagagg aaggggtggt agaggagcaa ggggtgctgc
1441 tccatccaga ggtcgtgggg ctgctcctcc ccgcggtaga gccggttatt cacagagagg
1501 aggtcctgga tcagcaagag gcgttcgagg tgcgagagga ggtgcccaac aacaaagagg
1561 ccgcgggcag ggaaaagggg tcgaggccgg tcctgacctg ttacaatgaa gactgacttg
1621 ctatgtggga ttacaccaga agcttgcagt ggagtaatgg taaggaaatc aagcaacctt
1681 aaatatgtcg gctgtatagg agcatattct attgcagaag accttcctat gaagatcatg
1741 gaatcaaata cgggacattg aactaatact tggactttga tatgaatttc tttaacaatt
1801 ttctctgcag tgcaagttat taaactaaag ctactctatt ttcaaaatgt gttccaacag
1861 aaatccttca taactcctag catggtatct taataaagaa taaagttctt ttaaaaaaaa
1921 aaaaaaaaaa aaaaaaaaaa a
//