LOCUS BC040359 3844 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens Hermansky-Pudlak syndrome 3, mRNA (cDNA clone MGC:21683 IMAGE:4385940), complete cds. ACCESSION BC040359 VERSION BC040359.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 3844) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 3844) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (27-NOV-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Lou Staudt cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Baylor College of Medicine Human Genome Sequencing Center Center code: BCM-HGSC Web site: http://www.hgsc.bcm.tmc.edu/cdna/ Contact: amg@bcm.tmc.edu Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H., Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati, A.N., Gibbs, R.A. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 26 Row: o Column: 18 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 28416957. FEATURES Location/Qualifiers source 1..3844 /db_xref="H-InvDB:HIT000052381" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:21683 IMAGE:4385940" /tissue_type="Lymph, lymphoma" /clone_lib="NIH_MGC_85" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..3844 /gene="HPS3" /gene_synonym="FLJ22704" /gene_synonym="SUTAL" /db_xref="GeneID:84343" /db_xref="HGNC:HGNC:15597" /db_xref="MIM:606118" CDS 78..3092 /gene="HPS3" /gene_synonym="FLJ22704" /gene_synonym="SUTAL" /codon_start=1 /product="Hermansky-Pudlak syndrome 3" /protein_id="AAH40359.1" /db_xref="GeneID:84343" /db_xref="HGNC:HGNC:15597" /db_xref="MIM:606118" /translation="MVQLYNLHPFGSQQVVPCKLEPDRFCGGGRDALFVAAGCKVEAF AVAGQELCQPRCAFSTLGRVLRLAYSEAGDYLVAIEEKNKATFLRAYVNWRNKRTENS RVCIRMIGHNVEGPFSKAFRDQMYIIEMPLSEAPLCISCCPVKGDLLVGCTNKLVLFS LKYQIINEEFSLLDFERSLIIHIDNITPVEVSFCVGYVAVMSDLEVLIVKLESGPKNG ERVHHHPHKTNNRIRRTEEGISNEISQLESDDFVICQKPLELLGEKSEQSGLSVTLES TGLADEKRKYSHFQHLLYRRFAPDISSYVLSDDIKLHSLQLLPIYQTGSLTSDGKNLS QEKELLSLFCFFSLPHVGYLYMVVKSVELMSVYQYPEKSQQAVLTPQFLHVITSNNLQ CFTVRCSAAAAREEDPYMDTTLKACPPVSMDVCALRIQLFIGLKAICHFKNHIILLTK AEPEAIPERRQSPKRLLSRKDTSVKIKIPPVAEAGWNLYIVNTISPVQLYKEMVDYSN TYKTVKTQSCIHLLSEAHLLVRAALMDASQLEPGEKAELLEAFKESCGHLGDCYSRLD SQHSHLTLPYYKMSGLSMAEVLARTDWTVEDGLQKYERGLIFYINHSLYENLDEELNE ELAAKVVQMFYVAEPKQVPHILCSPSMKNINPLTAMSYLRKLDTSGFSSILVTLTKAA VALKMGDLDMHRNEMKSHSEMKLVCGFILEPRLLIQQRKGQIVPTELALHLKETQPGL LVASVLGLQKNNKIGIEEADSFFKVLCAKDEDTIPQLLVDFWEAQLVACLPDVVLQEL FFKLTSQYIWRLSKRQPPDTTPLRTSEDLINACSHYGLIYPWVHVVISSDSLADKNYT EDLSKLQSLICGPSFDIASIIPFLEPLSEDTIAGLSVHVLCRTRLKEYEQCIDILLER CPEAVIPYANHELKEENRTLWWKKLLPELCQRIKCGGEKYQLYLSSLKETLSIVAVEL ELKDFMNVLPEDGTATFFLPYLLYCSRKKPLT" BASE COUNT 1094 a 788 c 840 g 1122 t ORIGIN 1 cctacattcg cggtcagcgc ggggtctccg ggcgccctgc agggcgggca ggctgtgcca 61 tcccgccgga cgtcgggatg gtgcagctgt acaacctgca cccgttcggg tcgcagcagg 121 tggtgccctg caagctggag ccggaccggt tctgtggcgg ggggcgtgac gcgcttttcg 181 tggcggcggg ctgcaaggtg gaggcgttcg cggtggccgg ccaggagctg tgccagccgc 241 ggtgcgcctt ctccacgctg ggccgggtgt tgcgcctggc ctacagcgag gctggagatt 301 atttggtagc aattgaagag aaaaacaaag ctacatttct acgtgcttat gtgaactgga 361 gaaataaaag gactgaaaac tctcgtgtgt gtatccgaat gattgggcat aatgtggagg 421 gaccattcag caaagccttc agagaccaga tgtacattat tgaaatgccg ctttcggagg 481 cccccttgtg catttcctgt tgccctgtga aaggagacct tctcgttggc tgcacaaata 541 aattagtctt atttagtttg aagtaccaga tcattaatga ggaattctca ctattggact 601 ttgaacgttc tttaattata cacatagata atatcactcc tgttgaggtt tctttttgtg 661 ttggatatgt tgctgtcatg tcagacttag aagtcttaat cgtaaaactg gagtcaggcc 721 ctaaaaatgg agagagagtt caccaccatc cacataagac caacaatcga ataagacgga 781 cagaagaagg catcagtaat gaaatttcac agcttgagtc agatgatttt gtcatctgcc 841 agaagcccct ggaacttctt ggtgaaaaaa gtgaacagtc tggattatct gttacactgg 901 agtctacggg attagctgat gaaaaaagaa aatattccca ctttcagcac ctgctctata 961 gacgttttgc tcctgatatt tcgtcctatg tcttgtctga tgacatcaag ctacattccc 1021 tccagctgct acccatttac cagaccggtt ctcttacatc tgatggaaaa aatttgtctc 1081 aggaaaaaga attgctgagt ctcttttgct ttttctcctt acctcatgtg ggctatctct 1141 acatggttgt caaatctgtt gaattgatgt cagtctacca gtatcctgaa aagtctcagc 1201 aggcagtact cacgccacaa tttttgcacg tcattacaag taacaacctg cagtgtttca 1261 ctgtgcggtg cagtgcggcg gcagctcgtg aggaggaccc gtacatggac accaccctga 1321 aggcttgccc acctgtcagt atggatgtct gtgctttaag aatacagctt ttcataggct 1381 tgaaagccat ctgtcacttt aaaaaccaca tcatactttt gactaaagca gaacctgaag 1441 ccattccaga gagaagacag tcacccaaga ggcttctttc gagaaaagat accagtgtta 1501 aaatcaaaat acctcctgta gctgaggctg ggtggaattt gtatattgtg aatacgatct 1561 caccagtgca actgtacaaa gagatggtag actatagcaa tacctataag actgtcaaaa 1621 cccagagctg cattcacctt ctcagtgagg ctcatctgtt agtgcgagct gccctgatgg 1681 atgccagtca gctggaacct ggagagaagg cagagctttt ggaagcattt aaggaaagct 1741 gtgggcacct tggggactgt tacagcaggc ttgactccca gcattctcat ctcaccttgc 1801 catactataa gatgtctggt ttgtctatgg ctgaagttct ggcccgcacg gactggacag 1861 tagaggatgg attacagaaa tacgagagag gattaatctt ttacattaat cattcacttt 1921 atgaaaacct ggatgaagaa ttaaatgaag aattagcagc aaaagtggtt cagatgtttt 1981 atgtggctga gccaaagcaa gtgccccata ttctctgtag tccttctatg aagaatatta 2041 atcctttaac tgccatgagc tatctaagga agctggatac ttctgggttt tcatcgatct 2101 tagtgacatt gaccaaggca gcagtggctc tgaaaatggg agatcttgac atgcacagaa 2161 atgaaatgaa aagccattca gagatgaagt tggtatgtgg cttcattctg gaacctcggc 2221 tgttgattca acagagaaag ggacagattg ttccaaccga gcttgcactt cacttgaagg 2281 aaactcagcc tggattgctt gtggcttcag ttctgggctt gcagaagaac aacaaaattg 2341 gaattgaaga agcagattcc ttttttaagg tgctttgtgc taaggatgaa gatacaattc 2401 ctcagctctt ggtagacttt tgggaagctc agctagtggc atgtctccca gatgtggtac 2461 ttcaggaact ctttttcaaa ctcacatcac agtacatctg gagattgtct aagaggcagc 2521 ctcctgacac cacaccattg cgaacatcgg aggatctgat aaatgcctgt agtcattatg 2581 gcttaattta tccatgggtt cacgtcgtaa tatcatctga ttctttagct gataaaaatt 2641 atacagaaga tctttcaaaa ttacagtctc ttatatgtgg tccttcattt gacatagctt 2701 ccattattcc gttcttggag ccactttcag aagacactat tgccggcctc agtgtccatg 2761 ttctgtgtcg tacacgcttg aaagagtatg aacagtgcat agacatactg ttagagagat 2821 gcccggaggc agtcattcca tatgctaatc atgaactgaa agaagagaac cggactctgt 2881 ggtggaaaaa actgttgcct gaactttgtc agagaataaa atgtggtgga gagaagtatc 2941 aactctacct gtcatcatta aaagaaacat tgtcaattgt tgctgtggaa ctagaactga 3001 aggatttcat gaatgttctc ccagaagatg gtactgcaac atttttcttg ccatatcttc 3061 tctattgcag tcgaaagaaa ccattgactt aaaggtatca tttgaaaaat accataatgg 3121 catttgagac tgaatttcta aaaattgaat gccaaagtac aagtagagga gttttttatt 3181 ttatatatca cacacacaca cacacacaca cacacacacg cacacatata tgatacaaat 3241 gctttcaggc tgcttacctt accatgtagt ggtaactatt cacttcttaa tttatgacct 3301 caatcaattt aattgtctag aatgtaaaaa gtctttaaga cataagaatt cctcaaagaa 3361 gccatacatt ttttaaggtg gggattgact tttattccaa ggaacaacat cagttcactg 3421 ttgttggaga catgacaatc attttcatcc caagaacact ttaaggaaac attttacaag 3481 tatgcttgaa agaatgtcac taactggtcc agaattttat cttcttgatt tttccagatt 3541 tctctatgtt tttgagaaag atgttaatgt tttgccatgg taaaagattt caaacctcat 3601 tttttttgtt ccttttcttg ttacttttaa gaaaactcat gctctgtttc tctgaatcaa 3661 atgaagtaga agtttacaaa gctaactttc ttcttgtcta gctattaaca tgatttgtca 3721 aatgcatgtt tttttcagcc aaagccttgt ttccattttt gttgatgtgt actcttgctc 3781 ttttagctag agtgtatgtg aaaataaaga aatatatcat tgtattcaca aaaaaaaaaa 3841 aaaa //