LOCUS BC040359 3844 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens Hermansky-Pudlak syndrome 3, mRNA (cDNA clone
MGC:21683 IMAGE:4385940), complete cds.
ACCESSION BC040359
VERSION BC040359.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3844)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3844)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (27-NOV-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Lou Staudt
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 26 Row: o Column: 18
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 28416957.
FEATURES Location/Qualifiers
source 1..3844
/db_xref="H-InvDB:HIT000052381"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:21683 IMAGE:4385940"
/tissue_type="Lymph, lymphoma"
/clone_lib="NIH_MGC_85"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..3844
/gene="HPS3"
/gene_synonym="FLJ22704"
/gene_synonym="SUTAL"
/db_xref="GeneID:84343"
/db_xref="HGNC:HGNC:15597"
/db_xref="MIM:606118"
CDS 78..3092
/gene="HPS3"
/gene_synonym="FLJ22704"
/gene_synonym="SUTAL"
/codon_start=1
/product="Hermansky-Pudlak syndrome 3"
/protein_id="AAH40359.1"
/db_xref="GeneID:84343"
/db_xref="HGNC:HGNC:15597"
/db_xref="MIM:606118"
/translation="MVQLYNLHPFGSQQVVPCKLEPDRFCGGGRDALFVAAGCKVEAF
AVAGQELCQPRCAFSTLGRVLRLAYSEAGDYLVAIEEKNKATFLRAYVNWRNKRTENS
RVCIRMIGHNVEGPFSKAFRDQMYIIEMPLSEAPLCISCCPVKGDLLVGCTNKLVLFS
LKYQIINEEFSLLDFERSLIIHIDNITPVEVSFCVGYVAVMSDLEVLIVKLESGPKNG
ERVHHHPHKTNNRIRRTEEGISNEISQLESDDFVICQKPLELLGEKSEQSGLSVTLES
TGLADEKRKYSHFQHLLYRRFAPDISSYVLSDDIKLHSLQLLPIYQTGSLTSDGKNLS
QEKELLSLFCFFSLPHVGYLYMVVKSVELMSVYQYPEKSQQAVLTPQFLHVITSNNLQ
CFTVRCSAAAAREEDPYMDTTLKACPPVSMDVCALRIQLFIGLKAICHFKNHIILLTK
AEPEAIPERRQSPKRLLSRKDTSVKIKIPPVAEAGWNLYIVNTISPVQLYKEMVDYSN
TYKTVKTQSCIHLLSEAHLLVRAALMDASQLEPGEKAELLEAFKESCGHLGDCYSRLD
SQHSHLTLPYYKMSGLSMAEVLARTDWTVEDGLQKYERGLIFYINHSLYENLDEELNE
ELAAKVVQMFYVAEPKQVPHILCSPSMKNINPLTAMSYLRKLDTSGFSSILVTLTKAA
VALKMGDLDMHRNEMKSHSEMKLVCGFILEPRLLIQQRKGQIVPTELALHLKETQPGL
LVASVLGLQKNNKIGIEEADSFFKVLCAKDEDTIPQLLVDFWEAQLVACLPDVVLQEL
FFKLTSQYIWRLSKRQPPDTTPLRTSEDLINACSHYGLIYPWVHVVISSDSLADKNYT
EDLSKLQSLICGPSFDIASIIPFLEPLSEDTIAGLSVHVLCRTRLKEYEQCIDILLER
CPEAVIPYANHELKEENRTLWWKKLLPELCQRIKCGGEKYQLYLSSLKETLSIVAVEL
ELKDFMNVLPEDGTATFFLPYLLYCSRKKPLT"
BASE COUNT 1094 a 788 c 840 g 1122 t
ORIGIN
1 cctacattcg cggtcagcgc ggggtctccg ggcgccctgc agggcgggca ggctgtgcca
61 tcccgccgga cgtcgggatg gtgcagctgt acaacctgca cccgttcggg tcgcagcagg
121 tggtgccctg caagctggag ccggaccggt tctgtggcgg ggggcgtgac gcgcttttcg
181 tggcggcggg ctgcaaggtg gaggcgttcg cggtggccgg ccaggagctg tgccagccgc
241 ggtgcgcctt ctccacgctg ggccgggtgt tgcgcctggc ctacagcgag gctggagatt
301 atttggtagc aattgaagag aaaaacaaag ctacatttct acgtgcttat gtgaactgga
361 gaaataaaag gactgaaaac tctcgtgtgt gtatccgaat gattgggcat aatgtggagg
421 gaccattcag caaagccttc agagaccaga tgtacattat tgaaatgccg ctttcggagg
481 cccccttgtg catttcctgt tgccctgtga aaggagacct tctcgttggc tgcacaaata
541 aattagtctt atttagtttg aagtaccaga tcattaatga ggaattctca ctattggact
601 ttgaacgttc tttaattata cacatagata atatcactcc tgttgaggtt tctttttgtg
661 ttggatatgt tgctgtcatg tcagacttag aagtcttaat cgtaaaactg gagtcaggcc
721 ctaaaaatgg agagagagtt caccaccatc cacataagac caacaatcga ataagacgga
781 cagaagaagg catcagtaat gaaatttcac agcttgagtc agatgatttt gtcatctgcc
841 agaagcccct ggaacttctt ggtgaaaaaa gtgaacagtc tggattatct gttacactgg
901 agtctacggg attagctgat gaaaaaagaa aatattccca ctttcagcac ctgctctata
961 gacgttttgc tcctgatatt tcgtcctatg tcttgtctga tgacatcaag ctacattccc
1021 tccagctgct acccatttac cagaccggtt ctcttacatc tgatggaaaa aatttgtctc
1081 aggaaaaaga attgctgagt ctcttttgct ttttctcctt acctcatgtg ggctatctct
1141 acatggttgt caaatctgtt gaattgatgt cagtctacca gtatcctgaa aagtctcagc
1201 aggcagtact cacgccacaa tttttgcacg tcattacaag taacaacctg cagtgtttca
1261 ctgtgcggtg cagtgcggcg gcagctcgtg aggaggaccc gtacatggac accaccctga
1321 aggcttgccc acctgtcagt atggatgtct gtgctttaag aatacagctt ttcataggct
1381 tgaaagccat ctgtcacttt aaaaaccaca tcatactttt gactaaagca gaacctgaag
1441 ccattccaga gagaagacag tcacccaaga ggcttctttc gagaaaagat accagtgtta
1501 aaatcaaaat acctcctgta gctgaggctg ggtggaattt gtatattgtg aatacgatct
1561 caccagtgca actgtacaaa gagatggtag actatagcaa tacctataag actgtcaaaa
1621 cccagagctg cattcacctt ctcagtgagg ctcatctgtt agtgcgagct gccctgatgg
1681 atgccagtca gctggaacct ggagagaagg cagagctttt ggaagcattt aaggaaagct
1741 gtgggcacct tggggactgt tacagcaggc ttgactccca gcattctcat ctcaccttgc
1801 catactataa gatgtctggt ttgtctatgg ctgaagttct ggcccgcacg gactggacag
1861 tagaggatgg attacagaaa tacgagagag gattaatctt ttacattaat cattcacttt
1921 atgaaaacct ggatgaagaa ttaaatgaag aattagcagc aaaagtggtt cagatgtttt
1981 atgtggctga gccaaagcaa gtgccccata ttctctgtag tccttctatg aagaatatta
2041 atcctttaac tgccatgagc tatctaagga agctggatac ttctgggttt tcatcgatct
2101 tagtgacatt gaccaaggca gcagtggctc tgaaaatggg agatcttgac atgcacagaa
2161 atgaaatgaa aagccattca gagatgaagt tggtatgtgg cttcattctg gaacctcggc
2221 tgttgattca acagagaaag ggacagattg ttccaaccga gcttgcactt cacttgaagg
2281 aaactcagcc tggattgctt gtggcttcag ttctgggctt gcagaagaac aacaaaattg
2341 gaattgaaga agcagattcc ttttttaagg tgctttgtgc taaggatgaa gatacaattc
2401 ctcagctctt ggtagacttt tgggaagctc agctagtggc atgtctccca gatgtggtac
2461 ttcaggaact ctttttcaaa ctcacatcac agtacatctg gagattgtct aagaggcagc
2521 ctcctgacac cacaccattg cgaacatcgg aggatctgat aaatgcctgt agtcattatg
2581 gcttaattta tccatgggtt cacgtcgtaa tatcatctga ttctttagct gataaaaatt
2641 atacagaaga tctttcaaaa ttacagtctc ttatatgtgg tccttcattt gacatagctt
2701 ccattattcc gttcttggag ccactttcag aagacactat tgccggcctc agtgtccatg
2761 ttctgtgtcg tacacgcttg aaagagtatg aacagtgcat agacatactg ttagagagat
2821 gcccggaggc agtcattcca tatgctaatc atgaactgaa agaagagaac cggactctgt
2881 ggtggaaaaa actgttgcct gaactttgtc agagaataaa atgtggtgga gagaagtatc
2941 aactctacct gtcatcatta aaagaaacat tgtcaattgt tgctgtggaa ctagaactga
3001 aggatttcat gaatgttctc ccagaagatg gtactgcaac atttttcttg ccatatcttc
3061 tctattgcag tcgaaagaaa ccattgactt aaaggtatca tttgaaaaat accataatgg
3121 catttgagac tgaatttcta aaaattgaat gccaaagtac aagtagagga gttttttatt
3181 ttatatatca cacacacaca cacacacaca cacacacacg cacacatata tgatacaaat
3241 gctttcaggc tgcttacctt accatgtagt ggtaactatt cacttcttaa tttatgacct
3301 caatcaattt aattgtctag aatgtaaaaa gtctttaaga cataagaatt cctcaaagaa
3361 gccatacatt ttttaaggtg gggattgact tttattccaa ggaacaacat cagttcactg
3421 ttgttggaga catgacaatc attttcatcc caagaacact ttaaggaaac attttacaag
3481 tatgcttgaa agaatgtcac taactggtcc agaattttat cttcttgatt tttccagatt
3541 tctctatgtt tttgagaaag atgttaatgt tttgccatgg taaaagattt caaacctcat
3601 tttttttgtt ccttttcttg ttacttttaa gaaaactcat gctctgtttc tctgaatcaa
3661 atgaagtaga agtttacaaa gctaactttc ttcttgtcta gctattaaca tgatttgtca
3721 aatgcatgtt tttttcagcc aaagccttgt ttccattttt gttgatgtgt actcttgctc
3781 ttttagctag agtgtatgtg aaaataaaga aatatatcat tgtattcaca aaaaaaaaaa
3841 aaaa
//