LOCUS BC038808 2455 bp mRNA linear HUM 30-JAN-2008 DEFINITION Homo sapiens apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3F, mRNA (cDNA clone MGC:46498 IMAGE:5227163), complete cds. ACCESSION BC038808 VERSION BC038808.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2455) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2455) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (25-OCT-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Life Technologies, Inc. cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 78 Row: h Column: 9 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 13399303. FEATURES Location/Qualifiers source 1..2455 /db_xref="H-InvDB:HIT000052073" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:46498 IMAGE:5227163" /tissue_type="Pancreas, Spleen, adult pooled" /clone_lib="NIH_MGC_120" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..2455 /gene="APOBEC3F" /gene_synonym="ARP8" /gene_synonym="BK150C2.4.MRNA" /gene_synonym="KA6" /db_xref="GeneID:200316" /db_xref="HGNC:HGNC:17356" /db_xref="MIM:608993" CDS 79..1200 /gene="APOBEC3F" /gene_synonym="ARP8" /gene_synonym="BK150C2.4.MRNA" /gene_synonym="KA6" /codon_start=1 /product="apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3F" /protein_id="AAH38808.1" /db_xref="GeneID:200316" /db_xref="HGNC:HGNC:17356" /db_xref="MIM:608993" /translation="MKPHFRNTVERMYRDTFSYNFYNRPILSRRNTVWLCYEVKTKGP SRPRLDAKIFRGQVYSQPEHHAEMCFLSWFCGNQLPAYKCFQITWFVSWTPCPDCVAK LAEFLSEHPNVTLTISAARLYYYWERDYRRALCRLSQAGARVKIMDDEEFAYCWENFV YSEGQPFMPWYKFDDNYAFLHRTLKEILRNPMEAMYPHIFYFHFKNLRKAYGRNESWL CFTMEVVKHHSPISWKRGVFRNQVDPETHCHAERCFLSWFCDDILSPNTNYEVTWYTS WSPCPECAGEVAEFLARHSNVNLTIFTARLYYFWDTDYQEGLRSLSQEGASVEIMGYK DFKYCWENFVYNDDEPFKPWKGLKYNFLFLDSKLQEILE" BASE COUNT 640 a 664 c 565 g 586 t ORIGIN 1 tgaaacctgg agcctggagc agaaagtgaa accctggtgc tccagacaaa gatcttagtc 61 gggactagcc ggccaaggat gaagcctcac ttcagaaaca cagtggagcg aatgtatcga 121 gacacattct cctacaactt ttataataga cccatccttt ctcgtcggaa taccgtctgg 181 ctgtgctacg aagtgaaaac aaagggtccc tcaaggcccc gtttggacgc aaagatcttt 241 cgaggccagg tgtattccca gcctgagcac cacgcagaaa tgtgcttcct ctcttggttc 301 tgtggcaacc agctgcctgc ttacaagtgt ttccagatca cctggtttgt atcctggacc 361 ccctgcccgg actgtgtggc gaagctggcc gaattcctgt ctgagcaccc caatgtcacc 421 ctgaccatct ccgccgcccg cctctactac tactgggaaa gagattaccg aagggcgctc 481 tgcaggctga gtcaggcagg ggcccgtgtg aagattatgg acgatgaaga atttgcatac 541 tgctgggaaa actttgtgta cagtgaaggt cagccattca tgccttggta caaattcgat 601 gacaattatg cattcctgca ccgcacgcta aaggagattc tcagaaaccc gatggaggca 661 atgtatccac acatattcta cttccacttt aaaaacctac gcaaagccta tggtcggaac 721 gaaagctggc tgtgcttcac catggaagtt gtaaagcacc actcacctat ctcctggaag 781 aggggcgtct tccgaaacca ggtggatcct gagacccatt gtcatgcaga aaggtgcttc 841 ctctcttggt tctgtgacga catactgtct cctaacacaa actacgaggt cacctggtac 901 acatcttgga gcccttgccc agagtgtgca ggggaggtgg ccgagttcct ggccaggcac 961 agcaacgtga atctcaccat cttcaccgcc cgcctctact acttctggga tacagattac 1021 caggaggggc tccgcagcct gagtcaggaa ggggcctccg tggagatcat gggctacaaa 1081 gattttaaat attgttggga aaactttgtg tacaatgatg atgagccatt caagccttgg 1141 aaaggactaa aatacaactt tctattcctg gacagcaagc tgcaggagat tctcgagtga 1201 ggggtctccc agggcctcat ggtctgtctc ctctagcctc ctgctcatgc tgtgcaggcc 1261 tcccctccat cctggaccag ctgtgctttt gcctggtcat cctgagcccc tcctggcctc 1321 agggccattc catagtgctc ccctgcctca ccacctcctc tccgctctcc caggttcttc 1381 ctgcagaggc ctctttctgc ctccatggct atccatccac ccaccaagac cctgttccct 1441 gagcctgcat gcccctaacc tgccttttcc catctcccca gcataaccta attttttttt 1501 ttttttttga gatggaattt cgctctgtca cccagactgg agtgcaatgg cttgatcttg 1561 gctcactgca aactctgcct accaggttca agcgattctc ctgcctccgc ctcccgagta 1621 gctggaatta cagacgcctg ccatcacgca cagctaactt tttttttttt gtatttttag 1681 tagtgactgg gtttcaccat gttggccagg ctggtcttga actcctgacc tcaggtgatc 1741 cgcctatctc agcctcccaa agtgctggga ttacaggcgt gagccactgg cccggcggca 1801 caaccaaatc ttattaaact caccctaggc tggccgcggt gactcatgcc tgtaatcccc 1861 cagcaatttg ggaggcagag gtgagagaat cgcttgagcc caggaattcg agaccagcct 1921 gggccacatg acaaagcccc atctctacaa aaaaattaca aaaaaaaaaa aaacaggtgt 1981 ggtggcatgc acctgtagtt taagctgctt ggaaggatga agtgggagga ttgcttgagc 2041 cggggaggtg gaggctgcag tgaactgaga tcacgtcact gaactccagt ctgagcaaca 2101 gatcgagacc ctgcctgaaa ataaatcaat aaataaactc aaccgaaatg ggcatgaaag 2161 ttgaaatggg tatgtaagtt gaaaaccaga agttttgaga aacatccttt gttaactttc 2221 atcctacaaa ttgggtcatt catgtcctac gcagctaaaa cagagcccag gagccaggga 2281 ggaaaagcag tcaggccaca caccattgct cccaaaatgg acttctctgc aagcctgact 2341 cctgaaactg tgcattgtac cctgaaacca gctttatcca tagcttctgc aataaatggc 2401 tgtaagtctt ggaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaa //