LOCUS BC038808 2455 bp mRNA linear HUM 30-JAN-2008
DEFINITION Homo sapiens apolipoprotein B mRNA editing enzyme, catalytic
polypeptide-like 3F, mRNA (cDNA clone MGC:46498 IMAGE:5227163),
complete cds.
ACCESSION BC038808
VERSION BC038808.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2455)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2455)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (25-OCT-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 78 Row: h Column: 9
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 13399303.
FEATURES Location/Qualifiers
source 1..2455
/db_xref="H-InvDB:HIT000052073"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:46498 IMAGE:5227163"
/tissue_type="Pancreas, Spleen, adult pooled"
/clone_lib="NIH_MGC_120"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2455
/gene="APOBEC3F"
/gene_synonym="ARP8"
/gene_synonym="BK150C2.4.MRNA"
/gene_synonym="KA6"
/db_xref="GeneID:200316"
/db_xref="HGNC:HGNC:17356"
/db_xref="MIM:608993"
CDS 79..1200
/gene="APOBEC3F"
/gene_synonym="ARP8"
/gene_synonym="BK150C2.4.MRNA"
/gene_synonym="KA6"
/codon_start=1
/product="apolipoprotein B mRNA editing enzyme, catalytic
polypeptide-like 3F"
/protein_id="AAH38808.1"
/db_xref="GeneID:200316"
/db_xref="HGNC:HGNC:17356"
/db_xref="MIM:608993"
/translation="MKPHFRNTVERMYRDTFSYNFYNRPILSRRNTVWLCYEVKTKGP
SRPRLDAKIFRGQVYSQPEHHAEMCFLSWFCGNQLPAYKCFQITWFVSWTPCPDCVAK
LAEFLSEHPNVTLTISAARLYYYWERDYRRALCRLSQAGARVKIMDDEEFAYCWENFV
YSEGQPFMPWYKFDDNYAFLHRTLKEILRNPMEAMYPHIFYFHFKNLRKAYGRNESWL
CFTMEVVKHHSPISWKRGVFRNQVDPETHCHAERCFLSWFCDDILSPNTNYEVTWYTS
WSPCPECAGEVAEFLARHSNVNLTIFTARLYYFWDTDYQEGLRSLSQEGASVEIMGYK
DFKYCWENFVYNDDEPFKPWKGLKYNFLFLDSKLQEILE"
BASE COUNT 640 a 664 c 565 g 586 t
ORIGIN
1 tgaaacctgg agcctggagc agaaagtgaa accctggtgc tccagacaaa gatcttagtc
61 gggactagcc ggccaaggat gaagcctcac ttcagaaaca cagtggagcg aatgtatcga
121 gacacattct cctacaactt ttataataga cccatccttt ctcgtcggaa taccgtctgg
181 ctgtgctacg aagtgaaaac aaagggtccc tcaaggcccc gtttggacgc aaagatcttt
241 cgaggccagg tgtattccca gcctgagcac cacgcagaaa tgtgcttcct ctcttggttc
301 tgtggcaacc agctgcctgc ttacaagtgt ttccagatca cctggtttgt atcctggacc
361 ccctgcccgg actgtgtggc gaagctggcc gaattcctgt ctgagcaccc caatgtcacc
421 ctgaccatct ccgccgcccg cctctactac tactgggaaa gagattaccg aagggcgctc
481 tgcaggctga gtcaggcagg ggcccgtgtg aagattatgg acgatgaaga atttgcatac
541 tgctgggaaa actttgtgta cagtgaaggt cagccattca tgccttggta caaattcgat
601 gacaattatg cattcctgca ccgcacgcta aaggagattc tcagaaaccc gatggaggca
661 atgtatccac acatattcta cttccacttt aaaaacctac gcaaagccta tggtcggaac
721 gaaagctggc tgtgcttcac catggaagtt gtaaagcacc actcacctat ctcctggaag
781 aggggcgtct tccgaaacca ggtggatcct gagacccatt gtcatgcaga aaggtgcttc
841 ctctcttggt tctgtgacga catactgtct cctaacacaa actacgaggt cacctggtac
901 acatcttgga gcccttgccc agagtgtgca ggggaggtgg ccgagttcct ggccaggcac
961 agcaacgtga atctcaccat cttcaccgcc cgcctctact acttctggga tacagattac
1021 caggaggggc tccgcagcct gagtcaggaa ggggcctccg tggagatcat gggctacaaa
1081 gattttaaat attgttggga aaactttgtg tacaatgatg atgagccatt caagccttgg
1141 aaaggactaa aatacaactt tctattcctg gacagcaagc tgcaggagat tctcgagtga
1201 ggggtctccc agggcctcat ggtctgtctc ctctagcctc ctgctcatgc tgtgcaggcc
1261 tcccctccat cctggaccag ctgtgctttt gcctggtcat cctgagcccc tcctggcctc
1321 agggccattc catagtgctc ccctgcctca ccacctcctc tccgctctcc caggttcttc
1381 ctgcagaggc ctctttctgc ctccatggct atccatccac ccaccaagac cctgttccct
1441 gagcctgcat gcccctaacc tgccttttcc catctcccca gcataaccta attttttttt
1501 ttttttttga gatggaattt cgctctgtca cccagactgg agtgcaatgg cttgatcttg
1561 gctcactgca aactctgcct accaggttca agcgattctc ctgcctccgc ctcccgagta
1621 gctggaatta cagacgcctg ccatcacgca cagctaactt tttttttttt gtatttttag
1681 tagtgactgg gtttcaccat gttggccagg ctggtcttga actcctgacc tcaggtgatc
1741 cgcctatctc agcctcccaa agtgctggga ttacaggcgt gagccactgg cccggcggca
1801 caaccaaatc ttattaaact caccctaggc tggccgcggt gactcatgcc tgtaatcccc
1861 cagcaatttg ggaggcagag gtgagagaat cgcttgagcc caggaattcg agaccagcct
1921 gggccacatg acaaagcccc atctctacaa aaaaattaca aaaaaaaaaa aaacaggtgt
1981 ggtggcatgc acctgtagtt taagctgctt ggaaggatga agtgggagga ttgcttgagc
2041 cggggaggtg gaggctgcag tgaactgaga tcacgtcact gaactccagt ctgagcaaca
2101 gatcgagacc ctgcctgaaa ataaatcaat aaataaactc aaccgaaatg ggcatgaaag
2161 ttgaaatggg tatgtaagtt gaaaaccaga agttttgaga aacatccttt gttaactttc
2221 atcctacaaa ttgggtcatt catgtcctac gcagctaaaa cagagcccag gagccaggga
2281 ggaaaagcag tcaggccaca caccattgct cccaaaatgg acttctctgc aagcctgact
2341 cctgaaactg tgcattgtac cctgaaacca gctttatcca tagcttctgc aataaatggc
2401 tgtaagtctt ggaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaa
//