LOCUS BC032571 2397 bp mRNA linear HUM 19-JUN-2006 DEFINITION Homo sapiens RUN and FYVE domain containing 1, mRNA (cDNA clone MGC:44949 IMAGE:5243223), complete cds. ACCESSION BC032571 VERSION BC032571.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2397) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2397) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (06-JUN-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Life Technologies, Inc. cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 69 Row: c Column: 8 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 22095370. FEATURES Location/Qualifiers source 1..2397 /db_xref="H-InvDB:HIT000041610" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:44949 IMAGE:5243223" /tissue_type="Brain, fetal, whole pooled" /clone_lib="NIH_MGC_121" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..2397 /gene="RUFY1" /gene_synonym="FLJ22251" /gene_synonym="RABIP4" /gene_synonym="ZFYVE12" /db_xref="GeneID:80230" /db_xref="HGNC:HGNC:19760" CDS 78..1880 /gene="RUFY1" /gene_synonym="FLJ22251" /gene_synonym="RABIP4" /gene_synonym="ZFYVE12" /codon_start=1 /product="RUN and FYVE domain containing 1" /protein_id="AAH32571.1" /db_xref="GeneID:80230" /db_xref="HGNC:HGNC:19760" /translation="MMEERANLMHMMKLSIKVLLQSALSLGRSLDADHAPLQQFFVVM EHCLKHGLKVKKSFIGQNKSFFGPLELVEKLCPEASDIATSVRNLPELKTAVGRGRAW LYLALMQKKLADYLKVLIDNKHLLSEFYEPEALMMEEEGMVIVGLLVGLNVLDANLCL KGEDLDSQVGVIDFSLYLKDVQDLDGGKEHERITDVLDQKNYVEELNRHLSCTVGDLQ TKIDGLEKTNSKLQEELSAATDRICSLQEEQQQLREQNELIRERSEKSVEITKQDTKV ELETYKQTRQGLDEMYSDVWKQLKEEKKVRLELEKELELQIGMKTEMEIAMKLLEKDT HEKQDTLVALRQQLEEVKAINLQMFHKAQNAESSLQQKNEAITSFEGKTNQVMSSMKQ MEERLQHSERARQGAEERSHKLQQELGGRIGALQLQLSQLHEQCSSLEKELKSEKEQR QALQRELQHEKDTSSLLRMELQQVEGLKKELRELQDEKAELQKICEEQEQALQEMGLH LSQSKLKMEDIKEVNQALKGHAWLKDDEATHCRQCEKEFSISRRKHHCRNCGHIFCNT CSSNELALPSYPKPVRVCDSCHTLLLQRCSSTAS" BASE COUNT 723 a 541 c 610 g 523 t ORIGIN 1 ctgggagagg cctctggagc aggaggccca gtggctcttc tgacccaagg ccccgccgtc 61 cagcttctaa gtgccagatg atggaggagc gtgccaacct gatgcacatg atgaaactca 121 gcatcaaggt gttgctccag tcggctctga gcctgggccg cagcctggat gcggaccatg 181 cccccttgca gcagttcttt gtagtgatgg agcactgcct caaacatggg ctgaaagtta 241 agaagagttt tattggccaa aataaatcat tctttggtcc tttggagctg gtggagaaac 301 tttgtccaga agcatcagat atagcgacta gtgtcagaaa tcttccagaa ttaaagacag 361 ctgtgggaag aggccgagcg tggctttatc ttgcactcat gcaaaagaaa ctggcagatt 421 atctgaaagt gcttatagac aataaacatc tcttaagcga gttctatgag cctgaggctt 481 taatgatgga ggaagaaggg atggtgattg ttggtctgct ggtgggactc aatgttctcg 541 atgccaatct ctgcttgaaa ggagaagact tggattctca ggttggagta atagattttt 601 ccctctacct taaggatgtg caggatcttg atggtggcaa ggagcatgaa agaattactg 661 atgtccttga tcaaaaaaat tatgtggaag aacttaaccg gcacttgagc tgcacagttg 721 gggatcttca aaccaagata gatggcttgg aaaagactaa ctcaaagctt caagaagagc 781 tttcagctgc aacagaccga atttgctcac ttcaagaaga acagcagcag ttaagagaac 841 aaaatgaatt aattcgagaa agaagtgaaa agagtgtaga gataacaaaa caggatacca 901 aagttgagct ggagacttac aagcaaactc ggcaaggtct ggatgaaatg tacagtgatg 961 tgtggaagca gctaaaagag gagaagaaag tccggttgga actggaaaaa gaactggagt 1021 tacaaattgg aatgaaaacc gaaatggaaa ttgcaatgaa gttactggaa aaggacaccc 1081 acgagaagca ggacacacta gttgccctcc gccagcagct ggaagaagtc aaagcgatta 1141 atttacagat gtttcacaaa gctcagaatg cagagagcag tttgcagcag aagaatgaag 1201 ccatcacatc ctttgaagga aaaaccaacc aagttatgtc cagcatgaaa caaatggaag 1261 aaaggttgca gcactcggag cgggcgaggc agggagctga ggagcggagc cacaagctgc 1321 agcaggagct gggcgggagg atcggcgccc tgcagctgca gctctcccag ctgcacgagc 1381 aatgctcaag cctggagaaa gaattgaaat cagaaaaaga gcaaagacag gctcttcagc 1441 gcgaattaca gcacgagaaa gacacttcct ctctactcag gatggagctg caacaagtgg 1501 aaggactgaa aaaggagttg cgggagcttc aggacgagaa ggcagagctg cagaagatct 1561 gcgaggagca ggaacaagcc ctccaggaaa tgggcctgca cctcagccag tccaagctga 1621 agatggaaga tataaaagaa gtgaaccagg cactgaaggg ccacgcctgg ctgaaagatg 1681 acgaagcgac acactgtagg cagtgtgaga aggagttctc catttcccgg agaaagcacc 1741 actgccggaa ctgtggccac atcttctgca acacctgctc cagcaacgag ctggccctgc 1801 cctcctaccc caagccggtg cgagtgtgcg acagctgcca caccctgctc ctgcagcgct 1861 gctcctccac ggcctcctga acgtccgtcc tcaggagcac agcctcacgg acagtgccaa 1921 accctgtggg tctccagggg cttgggaaat gtgttctttc ccaagagtat caaaggaaag 1981 aatcaaattt cttgcccggt cactggcact ccagaagaca gcgtgccgga accggcagct 2041 ctcacctttc tgtgacttgt tcggaattaa ctcctctgga tggaaacttc catcttactt 2101 ggttacatca cggctctggt tcagatacaa cttcatgatt ttgctactat catttttcac 2161 ttttcaaaga atttaaccta ttttacagca gttcagttct gctagtgagt agttttcctc 2221 tcctaccttc cttctaaaaa cctgattcat gcacagcgtt tgacacacat ggagtctgcc 2281 agtgtgcctt ctctgcttca gacaagagat ctgccatttc atgcccttgt gactacctat 2341 cattggccct gcaataaaat catttatttt tcaaaaaaaa aaaaaaaaaa aaaaaaa //