LOCUS BC032571 2397 bp mRNA linear HUM 19-JUN-2006
DEFINITION Homo sapiens RUN and FYVE domain containing 1, mRNA (cDNA clone
MGC:44949 IMAGE:5243223), complete cds.
ACCESSION BC032571
VERSION BC032571.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2397)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2397)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (06-JUN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 69 Row: c Column: 8
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 22095370.
FEATURES Location/Qualifiers
source 1..2397
/db_xref="H-InvDB:HIT000041610"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:44949 IMAGE:5243223"
/tissue_type="Brain, fetal, whole pooled"
/clone_lib="NIH_MGC_121"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2397
/gene="RUFY1"
/gene_synonym="FLJ22251"
/gene_synonym="RABIP4"
/gene_synonym="ZFYVE12"
/db_xref="GeneID:80230"
/db_xref="HGNC:HGNC:19760"
CDS 78..1880
/gene="RUFY1"
/gene_synonym="FLJ22251"
/gene_synonym="RABIP4"
/gene_synonym="ZFYVE12"
/codon_start=1
/product="RUN and FYVE domain containing 1"
/protein_id="AAH32571.1"
/db_xref="GeneID:80230"
/db_xref="HGNC:HGNC:19760"
/translation="MMEERANLMHMMKLSIKVLLQSALSLGRSLDADHAPLQQFFVVM
EHCLKHGLKVKKSFIGQNKSFFGPLELVEKLCPEASDIATSVRNLPELKTAVGRGRAW
LYLALMQKKLADYLKVLIDNKHLLSEFYEPEALMMEEEGMVIVGLLVGLNVLDANLCL
KGEDLDSQVGVIDFSLYLKDVQDLDGGKEHERITDVLDQKNYVEELNRHLSCTVGDLQ
TKIDGLEKTNSKLQEELSAATDRICSLQEEQQQLREQNELIRERSEKSVEITKQDTKV
ELETYKQTRQGLDEMYSDVWKQLKEEKKVRLELEKELELQIGMKTEMEIAMKLLEKDT
HEKQDTLVALRQQLEEVKAINLQMFHKAQNAESSLQQKNEAITSFEGKTNQVMSSMKQ
MEERLQHSERARQGAEERSHKLQQELGGRIGALQLQLSQLHEQCSSLEKELKSEKEQR
QALQRELQHEKDTSSLLRMELQQVEGLKKELRELQDEKAELQKICEEQEQALQEMGLH
LSQSKLKMEDIKEVNQALKGHAWLKDDEATHCRQCEKEFSISRRKHHCRNCGHIFCNT
CSSNELALPSYPKPVRVCDSCHTLLLQRCSSTAS"
BASE COUNT 723 a 541 c 610 g 523 t
ORIGIN
1 ctgggagagg cctctggagc aggaggccca gtggctcttc tgacccaagg ccccgccgtc
61 cagcttctaa gtgccagatg atggaggagc gtgccaacct gatgcacatg atgaaactca
121 gcatcaaggt gttgctccag tcggctctga gcctgggccg cagcctggat gcggaccatg
181 cccccttgca gcagttcttt gtagtgatgg agcactgcct caaacatggg ctgaaagtta
241 agaagagttt tattggccaa aataaatcat tctttggtcc tttggagctg gtggagaaac
301 tttgtccaga agcatcagat atagcgacta gtgtcagaaa tcttccagaa ttaaagacag
361 ctgtgggaag aggccgagcg tggctttatc ttgcactcat gcaaaagaaa ctggcagatt
421 atctgaaagt gcttatagac aataaacatc tcttaagcga gttctatgag cctgaggctt
481 taatgatgga ggaagaaggg atggtgattg ttggtctgct ggtgggactc aatgttctcg
541 atgccaatct ctgcttgaaa ggagaagact tggattctca ggttggagta atagattttt
601 ccctctacct taaggatgtg caggatcttg atggtggcaa ggagcatgaa agaattactg
661 atgtccttga tcaaaaaaat tatgtggaag aacttaaccg gcacttgagc tgcacagttg
721 gggatcttca aaccaagata gatggcttgg aaaagactaa ctcaaagctt caagaagagc
781 tttcagctgc aacagaccga atttgctcac ttcaagaaga acagcagcag ttaagagaac
841 aaaatgaatt aattcgagaa agaagtgaaa agagtgtaga gataacaaaa caggatacca
901 aagttgagct ggagacttac aagcaaactc ggcaaggtct ggatgaaatg tacagtgatg
961 tgtggaagca gctaaaagag gagaagaaag tccggttgga actggaaaaa gaactggagt
1021 tacaaattgg aatgaaaacc gaaatggaaa ttgcaatgaa gttactggaa aaggacaccc
1081 acgagaagca ggacacacta gttgccctcc gccagcagct ggaagaagtc aaagcgatta
1141 atttacagat gtttcacaaa gctcagaatg cagagagcag tttgcagcag aagaatgaag
1201 ccatcacatc ctttgaagga aaaaccaacc aagttatgtc cagcatgaaa caaatggaag
1261 aaaggttgca gcactcggag cgggcgaggc agggagctga ggagcggagc cacaagctgc
1321 agcaggagct gggcgggagg atcggcgccc tgcagctgca gctctcccag ctgcacgagc
1381 aatgctcaag cctggagaaa gaattgaaat cagaaaaaga gcaaagacag gctcttcagc
1441 gcgaattaca gcacgagaaa gacacttcct ctctactcag gatggagctg caacaagtgg
1501 aaggactgaa aaaggagttg cgggagcttc aggacgagaa ggcagagctg cagaagatct
1561 gcgaggagca ggaacaagcc ctccaggaaa tgggcctgca cctcagccag tccaagctga
1621 agatggaaga tataaaagaa gtgaaccagg cactgaaggg ccacgcctgg ctgaaagatg
1681 acgaagcgac acactgtagg cagtgtgaga aggagttctc catttcccgg agaaagcacc
1741 actgccggaa ctgtggccac atcttctgca acacctgctc cagcaacgag ctggccctgc
1801 cctcctaccc caagccggtg cgagtgtgcg acagctgcca caccctgctc ctgcagcgct
1861 gctcctccac ggcctcctga acgtccgtcc tcaggagcac agcctcacgg acagtgccaa
1921 accctgtggg tctccagggg cttgggaaat gtgttctttc ccaagagtat caaaggaaag
1981 aatcaaattt cttgcccggt cactggcact ccagaagaca gcgtgccgga accggcagct
2041 ctcacctttc tgtgacttgt tcggaattaa ctcctctgga tggaaacttc catcttactt
2101 ggttacatca cggctctggt tcagatacaa cttcatgatt ttgctactat catttttcac
2161 ttttcaaaga atttaaccta ttttacagca gttcagttct gctagtgagt agttttcctc
2221 tcctaccttc cttctaaaaa cctgattcat gcacagcgtt tgacacacat ggagtctgcc
2281 agtgtgcctt ctctgcttca gacaagagat ctgccatttc atgcccttgt gactacctat
2341 cattggccct gcaataaaat catttatttt tcaaaaaaaa aaaaaaaaaa aaaaaaa
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