LOCUS BC032363 1405 bp mRNA linear HUM 07-AUG-2008 DEFINITION Homo sapiens claudin 5, mRNA (cDNA clone MGC:40358 IMAGE:5242567), complete cds. ACCESSION BC032363 VERSION BC032363.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1405) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1405) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (06-JUN-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Life Technologies, Inc. cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 64 Row: o Column: 22 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 38570041. FEATURES Location/Qualifiers source 1..1405 /db_xref="H-InvDB:HIT000041511" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:40358 IMAGE:5242567" /tissue_type="Brain, fetal, whole pooled" /clone_lib="NIH_MGC_121" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..1405 /gene="CLDN5" /gene_synonym="BEC1" /gene_synonym="CPETRL1" /db_xref="GeneID:7122" /db_xref="HGNC:HGNC:2047" /db_xref="MIM:602101" CDS 146..802 /gene="CLDN5" /gene_synonym="BEC1" /gene_synonym="CPETRL1" /codon_start=1 /product="claudin 5" /protein_id="AAH32363.1" /db_xref="GeneID:7122" /db_xref="HGNC:HGNC:2047" /db_xref="MIM:602101" /translation="MGSAALEILGLVLCLVGWGGLILACGLPMWQVTAFLDHNIVTAQ TTWKGLWMSCVVQSTGHMQCKVYDSVLALSTEVQAARALTVSAVLLAFVALFVTLAGA QCTTCVAPGPAKARVALTGGVLYLFCGLLALVPLCWFANIVVREFYDPSVPVSQKYEL GAALYIGWAATALLMVGGCLLCCGAWVCTGRPDLSFPVKYSAPRRPTATGDYDKKNYV " BASE COUNT 223 a 449 c 484 g 249 t ORIGIN 1 ggaggtgcga cagacccgcg gggcaaacgg actggggcca agagccggga gcgcgggcgc 61 aaaggcacca gggcccgccc agggcgccgc gcagcacggc cttgggggtt ctgcgggcct 121 tcgggtgcgc gtctcgcctc tagccatggg gtccgcagcg ttggagatcc tgggcctggt 181 gctgtgcctg gtgggctggg ggggtctgat cctggcgtgc gggctgccca tgtggcaggt 241 gaccgccttc ctggaccaca acatcgtgac ggcgcagacc acctggaagg ggctgtggat 301 gtcgtgcgtg gtgcagagca ccgggcacat gcagtgcaaa gtgtacgact cggtgctggc 361 tctgagcacc gaggtgcagg cggcgcgggc gctcaccgtg agcgccgtgc tgctggcgtt 421 cgttgcgctc ttcgtgaccc tggcgggcgc gcagtgcacc acctgcgtgg ccccgggccc 481 ggccaaggcg cgtgtggccc tcacgggagg cgtgctctac ctgttttgcg ggctgctggc 541 gctcgtgcca ctctgctggt tcgccaacat tgtcgtccgc gagttttacg acccgtctgt 601 gcccgtgtcg cagaagtacg agctgggcgc agcgctgtac atcggctggg cggccaccgc 661 gctgctcatg gtaggcggct gcctcttgtg ctgcggcgcc tgggtctgca ccggccgtcc 721 cgacctcagc ttccccgtga agtactcagc gccgcggcgg cccacggcca ccggcgacta 781 cgacaagaag aactacgtct gagggcgctg ggcacggccg ggcccctcct gccagccacg 841 cctgcgaggc gttggataag cctggggagc cccgcatgga ccgcggcttc cgccgggtag 901 cgcggcgcgc aggctcctcg gaacgtccgg ctctgcgccc cgacgcggct cctggatccg 961 ctcctgcctg cgcccgcagc tgaccttctc ctgccactag cccggccctg cccttaacag 1021 acggaatgaa gtttcctttt ctgtgcgcgg cgctgtttcc ataggcagag cgggtgtcag 1081 actgaggatt tcgcttcccc tccaagacgc tgggggtctt ggctgctgcc ttacttccca 1141 gaggctcctg ctgacttcgg aggggcggat gcagagccca gggcccccac cggaagatgt 1201 gtacagctgg tctttactcc atcggcaggg cccgagccca gggaccagtg acttggcctg 1261 gacctcccgg tctcactcca gcatctcccc aggcaaggct tgtgggcacc ggagcttgag 1321 agagggcggg agtgggaagg ctaagaatct gcttagtaaa tggtttgaac tctcaaaaaa 1381 aaaaaaaaaa aaaaaaaaaa aaaaa //