LOCUS BC032363 1405 bp mRNA linear HUM 07-AUG-2008
DEFINITION Homo sapiens claudin 5, mRNA (cDNA clone MGC:40358 IMAGE:5242567),
complete cds.
ACCESSION BC032363
VERSION BC032363.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1405)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1405)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (06-JUN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 64 Row: o Column: 22
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 38570041.
FEATURES Location/Qualifiers
source 1..1405
/db_xref="H-InvDB:HIT000041511"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:40358 IMAGE:5242567"
/tissue_type="Brain, fetal, whole pooled"
/clone_lib="NIH_MGC_121"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1405
/gene="CLDN5"
/gene_synonym="BEC1"
/gene_synonym="CPETRL1"
/db_xref="GeneID:7122"
/db_xref="HGNC:HGNC:2047"
/db_xref="MIM:602101"
CDS 146..802
/gene="CLDN5"
/gene_synonym="BEC1"
/gene_synonym="CPETRL1"
/codon_start=1
/product="claudin 5"
/protein_id="AAH32363.1"
/db_xref="GeneID:7122"
/db_xref="HGNC:HGNC:2047"
/db_xref="MIM:602101"
/translation="MGSAALEILGLVLCLVGWGGLILACGLPMWQVTAFLDHNIVTAQ
TTWKGLWMSCVVQSTGHMQCKVYDSVLALSTEVQAARALTVSAVLLAFVALFVTLAGA
QCTTCVAPGPAKARVALTGGVLYLFCGLLALVPLCWFANIVVREFYDPSVPVSQKYEL
GAALYIGWAATALLMVGGCLLCCGAWVCTGRPDLSFPVKYSAPRRPTATGDYDKKNYV
"
BASE COUNT 223 a 449 c 484 g 249 t
ORIGIN
1 ggaggtgcga cagacccgcg gggcaaacgg actggggcca agagccggga gcgcgggcgc
61 aaaggcacca gggcccgccc agggcgccgc gcagcacggc cttgggggtt ctgcgggcct
121 tcgggtgcgc gtctcgcctc tagccatggg gtccgcagcg ttggagatcc tgggcctggt
181 gctgtgcctg gtgggctggg ggggtctgat cctggcgtgc gggctgccca tgtggcaggt
241 gaccgccttc ctggaccaca acatcgtgac ggcgcagacc acctggaagg ggctgtggat
301 gtcgtgcgtg gtgcagagca ccgggcacat gcagtgcaaa gtgtacgact cggtgctggc
361 tctgagcacc gaggtgcagg cggcgcgggc gctcaccgtg agcgccgtgc tgctggcgtt
421 cgttgcgctc ttcgtgaccc tggcgggcgc gcagtgcacc acctgcgtgg ccccgggccc
481 ggccaaggcg cgtgtggccc tcacgggagg cgtgctctac ctgttttgcg ggctgctggc
541 gctcgtgcca ctctgctggt tcgccaacat tgtcgtccgc gagttttacg acccgtctgt
601 gcccgtgtcg cagaagtacg agctgggcgc agcgctgtac atcggctggg cggccaccgc
661 gctgctcatg gtaggcggct gcctcttgtg ctgcggcgcc tgggtctgca ccggccgtcc
721 cgacctcagc ttccccgtga agtactcagc gccgcggcgg cccacggcca ccggcgacta
781 cgacaagaag aactacgtct gagggcgctg ggcacggccg ggcccctcct gccagccacg
841 cctgcgaggc gttggataag cctggggagc cccgcatgga ccgcggcttc cgccgggtag
901 cgcggcgcgc aggctcctcg gaacgtccgg ctctgcgccc cgacgcggct cctggatccg
961 ctcctgcctg cgcccgcagc tgaccttctc ctgccactag cccggccctg cccttaacag
1021 acggaatgaa gtttcctttt ctgtgcgcgg cgctgtttcc ataggcagag cgggtgtcag
1081 actgaggatt tcgcttcccc tccaagacgc tgggggtctt ggctgctgcc ttacttccca
1141 gaggctcctg ctgacttcgg aggggcggat gcagagccca gggcccccac cggaagatgt
1201 gtacagctgg tctttactcc atcggcaggg cccgagccca gggaccagtg acttggcctg
1261 gacctcccgg tctcactcca gcatctcccc aggcaaggct tgtgggcacc ggagcttgag
1321 agagggcggg agtgggaagg ctaagaatct gcttagtaaa tggtttgaac tctcaaaaaa
1381 aaaaaaaaaa aaaaaaaaaa aaaaa
//