LOCUS BC030805 2639 bp mRNA linear HUM 22-FEB-2007 DEFINITION Homo sapiens syndecan 4, mRNA (cDNA clone MGC:22217 IMAGE:4690309), complete cds. ACCESSION BC030805 VERSION BC030805.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2639) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2639) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (03-JUN-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: CLONTECH cDNA Library Preparation: CLONTECH Laboratories, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 36 Row: l Column: 9 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 38201674. FEATURES Location/Qualifiers source 1..2639 /db_xref="H-InvDB:HIT000041145" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:22217 IMAGE:4690309" /tissue_type="Lung" /clone_lib="NIH_MGC_77" /lab_host="DH10B" /note="Vector: pDNR-LIB" gene 1..2639 /gene="SDC4" /gene_synonym="SYND4" /db_xref="GeneID:6385" /db_xref="HGNC:HGNC:10661" /db_xref="MIM:600017" CDS 41..637 /gene="SDC4" /gene_synonym="SYND4" /codon_start=1 /product="syndecan 4" /protein_id="AAH30805.1" /db_xref="GeneID:6385" /db_xref="HGNC:HGNC:10661" /db_xref="MIM:600017" /translation="MAPARLFALLLFFVGGVAESIRETEVIDPQDLLEGRYFSGALPD DEDVVGPGQESDDFELSGSGDLDDLEDSMIGPEVVHPLVPLDNHIPERAGSGSQVPTE PKKLEENEVIPKRISPVEESEDVSNKVSMSSTVQGSNIFERTEVLAALIVGGIVGILF AVFLILLLMYRMKKKDEGSYDLGKKPIYKKAPTNEFYA" BASE COUNT 570 a 608 c 668 g 793 t ORIGIN 1 actcgccgca gcctgcgcgc cttctccagt ccgcggtgcc atggcccccg cccgtctgtt 61 cgcgctgctg ctgttcttcg taggcggagt cgccgagtcg atccgagaga ctgaggtcat 121 cgacccccag gacctcctag aaggccgata cttctccgga gccctaccag acgatgagga 181 tgtagtgggg cccgggcagg aatctgatga ctttgagctg tctggctctg gagatctgga 241 tgacttggaa gactccatga tcggccctga agttgtccat cccttggtgc ctctagataa 301 ccatatccct gagagggcag ggtctgggag ccaagtcccc accgaaccca agaaactaga 361 ggagaatgag gttatcccca agagaatctc acccgttgaa gagagtgagg atgtgtccaa 421 caaggtgtca atgtccagca ctgtgcaggg cagcaacatc tttgagagaa cggaggtcct 481 ggcagctctg attgtgggtg gcatcgtggg catcctcttt gccgtcttcc tgatcctact 541 gctcatgtac cgtatgaaga agaaggatga aggcagctat gacctgggca agaaacccat 601 ctacaagaaa gcccccacca atgagttcta cgcgtgaagc ttgcttgtgg gcactggctt 661 ggactttagc ggggagggaa gccaggggat tttgaagggt ggacattagg gtagggtgag 721 gtcaacctaa tactgacttg tcagtatctc cagctctgat tacctttgaa gtgttcagaa 781 gagacattgt cttctactgt tctgccaggt tcttcttgag ctttgggcct cagttgccct 841 ggcagaaaaa tggattcaac ttggcctttc tgaaggcaag actgggattg gatcacttct 901 taaacttcca gttaagaatc taggtccgcc ctcaagccca tactgaccat gcctcatcca 961 gagctcctct gaagccaggg ggctaacgga tgttgtgtgg agtcctggct ggaggtcctc 1021 ccccagtggc cttcctccct tcctttcaca gccggtctct ctgccaggaa atgggggaag 1081 gaactagaac cacctgcacc ttgagatgtt tctgtaaatg ggtacttgtg atcacactac 1141 gggaatctct gtggtatata cctggggcca ttctaggctc tttcaagtga cttttggaaa 1201 tcaacctttt ttatttgggg gggaggatgg ggaaaagagc tgagagttta tgctgaaatg 1261 gatttataga atatttgtaa atctattttt agtgtttgtt cgttttttta actgttcatt 1321 cctttgtgca gagtgtatat ctctgcctgg gcaagagtgt ggaggtgccg aggtgtcttc 1381 attctctcgc acatttccac agcacctgct aagtttgtat ttaatggttt ttgtttttgt 1441 ttttgtttgt ttcttgaaaa tgagagaaga gccggagaga tgatttttat taattttttt 1501 tttttttttt ttttttacta tttatagctt tagatagggc ctcccttccc ctcttctttc 1561 tttgttctct ttcattaaac cccttcccca gttttttttt tatactttaa accccgctcc 1621 tcatggcctt ggccctttct gaagctgctt cctcttataa aatagctttt gccgaaacat 1681 agtttttttt tagcagatcc caaaatataa tgaaggggat ggtgggatat ttgtgtctgt 1741 gttcttataa tatattatta ttcttccttg gttctagaaa aatagataaa tatatttttt 1801 tcaggaaata gtgtggtgtt tccagtttga tgttgctggg tggttgagtg agtgaatttt 1861 catgtggctg ggtgggtttt tgcctttttc tcttgccctg ttcctggtgc cttctgatgg 1921 ggctggaata gttgaggtgg atggttctac cctttctgcc ttctgtttgg gacccagctg 1981 gtgttctttg gtttgctttc ttcaggctct agggctgtgc tatccaatac agtaaccaca 2041 tgcggctgtt taaagttaag ccaattaaaa tcacataaga ttaaaaattc cttcctcagt 2101 tgcactaacc acgtttctag aggcgtcact gtatgtagtt catggctact gtactgacag 2161 cgagagcatg tccatctgtt ggacagcact attctagaga actaaactgg cttaacgagt 2221 cacagcctca gctgtgctgg gacgaccctt gtctccctgg gtaggggggg gggaatgggg 2281 gagggctgat gaggccccag ctggggcctg ttgtctggga ccctccctct cctgagaggg 2341 gaggcctggt ggcttagcct gggcaggtcg tgtctcctcc tgaccccagt ggctgcggtg 2401 aggggaacca ccctcccttg ctgcaccagt ggccattagc tcccgtcacc actgcaaccc 2461 agggtcccag ctggctgggt cctcttctgc ccccagtgcc cttccccttg ggctgtgttg 2521 gagtgagcac ctcctctgta ggcacctctc acactgttgt ctgttactga ttttttttga 2581 taaaaagata ataaaacctg gtactttcca aaaaaaaaaa aaaaaaaaaa aaaaaaaaa //