LOCUS BC030805 2639 bp mRNA linear HUM 22-FEB-2007
DEFINITION Homo sapiens syndecan 4, mRNA (cDNA clone MGC:22217 IMAGE:4690309),
complete cds.
ACCESSION BC030805
VERSION BC030805.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2639)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2639)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-JUN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: CLONTECH
cDNA Library Preparation: CLONTECH Laboratories, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 36 Row: l Column: 9
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 38201674.
FEATURES Location/Qualifiers
source 1..2639
/db_xref="H-InvDB:HIT000041145"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:22217 IMAGE:4690309"
/tissue_type="Lung"
/clone_lib="NIH_MGC_77"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene 1..2639
/gene="SDC4"
/gene_synonym="SYND4"
/db_xref="GeneID:6385"
/db_xref="HGNC:HGNC:10661"
/db_xref="MIM:600017"
CDS 41..637
/gene="SDC4"
/gene_synonym="SYND4"
/codon_start=1
/product="syndecan 4"
/protein_id="AAH30805.1"
/db_xref="GeneID:6385"
/db_xref="HGNC:HGNC:10661"
/db_xref="MIM:600017"
/translation="MAPARLFALLLFFVGGVAESIRETEVIDPQDLLEGRYFSGALPD
DEDVVGPGQESDDFELSGSGDLDDLEDSMIGPEVVHPLVPLDNHIPERAGSGSQVPTE
PKKLEENEVIPKRISPVEESEDVSNKVSMSSTVQGSNIFERTEVLAALIVGGIVGILF
AVFLILLLMYRMKKKDEGSYDLGKKPIYKKAPTNEFYA"
BASE COUNT 570 a 608 c 668 g 793 t
ORIGIN
1 actcgccgca gcctgcgcgc cttctccagt ccgcggtgcc atggcccccg cccgtctgtt
61 cgcgctgctg ctgttcttcg taggcggagt cgccgagtcg atccgagaga ctgaggtcat
121 cgacccccag gacctcctag aaggccgata cttctccgga gccctaccag acgatgagga
181 tgtagtgggg cccgggcagg aatctgatga ctttgagctg tctggctctg gagatctgga
241 tgacttggaa gactccatga tcggccctga agttgtccat cccttggtgc ctctagataa
301 ccatatccct gagagggcag ggtctgggag ccaagtcccc accgaaccca agaaactaga
361 ggagaatgag gttatcccca agagaatctc acccgttgaa gagagtgagg atgtgtccaa
421 caaggtgtca atgtccagca ctgtgcaggg cagcaacatc tttgagagaa cggaggtcct
481 ggcagctctg attgtgggtg gcatcgtggg catcctcttt gccgtcttcc tgatcctact
541 gctcatgtac cgtatgaaga agaaggatga aggcagctat gacctgggca agaaacccat
601 ctacaagaaa gcccccacca atgagttcta cgcgtgaagc ttgcttgtgg gcactggctt
661 ggactttagc ggggagggaa gccaggggat tttgaagggt ggacattagg gtagggtgag
721 gtcaacctaa tactgacttg tcagtatctc cagctctgat tacctttgaa gtgttcagaa
781 gagacattgt cttctactgt tctgccaggt tcttcttgag ctttgggcct cagttgccct
841 ggcagaaaaa tggattcaac ttggcctttc tgaaggcaag actgggattg gatcacttct
901 taaacttcca gttaagaatc taggtccgcc ctcaagccca tactgaccat gcctcatcca
961 gagctcctct gaagccaggg ggctaacgga tgttgtgtgg agtcctggct ggaggtcctc
1021 ccccagtggc cttcctccct tcctttcaca gccggtctct ctgccaggaa atgggggaag
1081 gaactagaac cacctgcacc ttgagatgtt tctgtaaatg ggtacttgtg atcacactac
1141 gggaatctct gtggtatata cctggggcca ttctaggctc tttcaagtga cttttggaaa
1201 tcaacctttt ttatttgggg gggaggatgg ggaaaagagc tgagagttta tgctgaaatg
1261 gatttataga atatttgtaa atctattttt agtgtttgtt cgttttttta actgttcatt
1321 cctttgtgca gagtgtatat ctctgcctgg gcaagagtgt ggaggtgccg aggtgtcttc
1381 attctctcgc acatttccac agcacctgct aagtttgtat ttaatggttt ttgtttttgt
1441 ttttgtttgt ttcttgaaaa tgagagaaga gccggagaga tgatttttat taattttttt
1501 tttttttttt ttttttacta tttatagctt tagatagggc ctcccttccc ctcttctttc
1561 tttgttctct ttcattaaac cccttcccca gttttttttt tatactttaa accccgctcc
1621 tcatggcctt ggccctttct gaagctgctt cctcttataa aatagctttt gccgaaacat
1681 agtttttttt tagcagatcc caaaatataa tgaaggggat ggtgggatat ttgtgtctgt
1741 gttcttataa tatattatta ttcttccttg gttctagaaa aatagataaa tatatttttt
1801 tcaggaaata gtgtggtgtt tccagtttga tgttgctggg tggttgagtg agtgaatttt
1861 catgtggctg ggtgggtttt tgcctttttc tcttgccctg ttcctggtgc cttctgatgg
1921 ggctggaata gttgaggtgg atggttctac cctttctgcc ttctgtttgg gacccagctg
1981 gtgttctttg gtttgctttc ttcaggctct agggctgtgc tatccaatac agtaaccaca
2041 tgcggctgtt taaagttaag ccaattaaaa tcacataaga ttaaaaattc cttcctcagt
2101 tgcactaacc acgtttctag aggcgtcact gtatgtagtt catggctact gtactgacag
2161 cgagagcatg tccatctgtt ggacagcact attctagaga actaaactgg cttaacgagt
2221 cacagcctca gctgtgctgg gacgaccctt gtctccctgg gtaggggggg gggaatgggg
2281 gagggctgat gaggccccag ctggggcctg ttgtctggga ccctccctct cctgagaggg
2341 gaggcctggt ggcttagcct gggcaggtcg tgtctcctcc tgaccccagt ggctgcggtg
2401 aggggaacca ccctcccttg ctgcaccagt ggccattagc tcccgtcacc actgcaaccc
2461 agggtcccag ctggctgggt cctcttctgc ccccagtgcc cttccccttg ggctgtgttg
2521 gagtgagcac ctcctctgta ggcacctctc acactgttgt ctgttactga ttttttttga
2581 taaaaagata ataaaacctg gtactttcca aaaaaaaaaa aaaaaaaaaa aaaaaaaaa
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