LOCUS BC028190 1738 bp mRNA linear HUM 06-JAN-2006 DEFINITION Homo sapiens homeobox D1, mRNA (cDNA clone IMAGE:5171360), partial cds. ACCESSION BC028190 VERSION BC028190.1 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1738) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1738) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (08-APR-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Life Technologies, Inc. cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 62 Row: d Column: 4 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 13375631. FEATURES Location/Qualifiers source 1..1738 /db_xref="H-InvDB:HIT000091533" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="IMAGE:5171360" /tissue_type="Brain, adult medulla" /clone_lib="NIH_MGC_119" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene <1..1738 /gene="HOXD1" /gene_synonym="Hox-4.7" /db_xref="GeneID:3231" /db_xref="HGNC:HGNC:5132" /db_xref="IMGT/GENE-DB:5132" /db_xref="MIM:142987" CDS <1..631 /gene="HOXD1" /gene_synonym="Hox-4.7" /codon_start=2 /product="HOXD1 protein" /protein_id="AAH28190.1" /db_xref="GeneID:3231" /db_xref="HGNC:HGNC:5132" /db_xref="IMGT/GENE-DB:5132" /db_xref="MIM:142987" /translation="LERAARVERAGGAAQTAAVLLSLCPAPYSGPGLRPTLAFAPGRP RAAVRTASGRAPVRAVHPGGGLRTWCRTCRGSWGRGLRLPGVRAGVRLPGRAGAGGPF PACLKASADGHPGAFQTASPAPGTYPKSVSPASGLPAAFSTFEWMKVKRNASKKDSGL GFVEETRSRANSMESASSTDSENVPGIEKISGRSSPWNFSWQTRRVWGR" BASE COUNT 432 a 457 c 437 g 412 t ORIGIN 1 gttggagagg gcagctcggg tagagagggc tggcggagcg gcgcagacgg cggcagtcct 61 gctcagcctc tgcccggctc cgtactccgg ccccggcctg cgcccgaccc tcgccttcgc 121 ccccggccgc ccccgcgcgg ccgtccgtac cgcctccggc cgcgccccag tacgcgcagt 181 gcaccctgga gggggcctac gaacctggtg ccgcacctgc cgcggcagct gggggcgcgg 241 actacggctt cctggggtcc gggccggcgt acgacttccc gggcgtgctg gggcgggcgg 301 cccttttccg gcttgtctca aagcgtcagc cgacggccac cctggtgctt tccagaccgc 361 atccccggcc ccaggcacct accccaagtc cgtctctccc gcctccggcc tccctgccgc 421 cttcagcacg ttcgagtgga tgaaagtgaa gaggaatgcc tctaagaaag acagcggttt 481 gggttttgtg gaggagacgc gttcccgggc gaattccatg gagtctgcct cgagtacaga 541 ttcggaaaat gtgccaggca ttgagaaaat ttcaggaagg agctctccgt ggaacttctc 601 ctggcaaact cgccgagtat ggggccgcta gcccctccag cgcgatccgc acgaatttca 661 gcaccaagca actgacagaa ctggaaaaag agtttcattt caataagtac ttaactcgag 721 cccggcgcat cgagatagcc aactgcttgc acctgaatga cacgcaagtc aaaatctggt 781 tccagaaccg caggatgaaa cagaagaaaa gggaacgaga agggcttctg gccacggcca 841 ttcctgtggc tcccctccaa cttcccctct ctggaacaac ccccactaag tttatcaaga 901 accccggcag cccttctcag tcccaagagc cttcgtgagg ccggtacttg gggccgaaaa 961 actgtggcct gcagaagtcc caggcgaccc ccatccctat ctagacttag gagctcagtt 1021 tgggatggag gtgggagaac aaaaatgaat agggatttca cttgggaaat gaagtacttt 1081 agttggcttc cgagttccag actatatgtc cagatattaa ttgactgtct tgtaagccac 1141 ttgtttggtt atgatttgtg tcttatcagg gaaaaggtgc ccagctgcca gcccagctcc 1201 gctgctatct ttgcctcact tagtcatgtg caattcgcgt tgcagagtgg cagaccatta 1261 gttgctgagt tctgtcagca ctctgatgtg ctcagaagag cacctgccca aagtttttct 1321 ggttttaatt taaaggacaa ggctacatat attcagcttt ttgagatgac caaagctagt 1381 tagggtctcc ttgatgtagc taagctgctt cagtgatctt cacatttgca ctccagtttt 1441 tttttcttta aaaaagcggt ttctacctct ctatgtgcct gagtgatgat acaatcgctg 1501 tttagttact agatgaacaa atccacagaa tgggtaaaga gtagaatctg aactatatct 1561 tgacaaatat tattcaaact tgaatgtaaa tatatacagt atgtatattt tttaaaaaga 1621 tttgcttgca atgaccttat aagtgacatt taatgtcata gcatgtaaag ggtttttttt 1681 gtaataaaaa ttatagaatc tgaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaa //