LOCUS BC028190 1738 bp mRNA linear HUM 06-JAN-2006
DEFINITION Homo sapiens homeobox D1, mRNA (cDNA clone IMAGE:5171360), partial
cds.
ACCESSION BC028190
VERSION BC028190.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1738)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1738)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (08-APR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 62 Row: d Column: 4
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 13375631.
FEATURES Location/Qualifiers
source 1..1738
/db_xref="H-InvDB:HIT000091533"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5171360"
/tissue_type="Brain, adult medulla"
/clone_lib="NIH_MGC_119"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene <1..1738
/gene="HOXD1"
/gene_synonym="Hox-4.7"
/db_xref="GeneID:3231"
/db_xref="HGNC:HGNC:5132"
/db_xref="IMGT/GENE-DB:5132"
/db_xref="MIM:142987"
CDS <1..631
/gene="HOXD1"
/gene_synonym="Hox-4.7"
/codon_start=2
/product="HOXD1 protein"
/protein_id="AAH28190.1"
/db_xref="GeneID:3231"
/db_xref="HGNC:HGNC:5132"
/db_xref="IMGT/GENE-DB:5132"
/db_xref="MIM:142987"
/translation="LERAARVERAGGAAQTAAVLLSLCPAPYSGPGLRPTLAFAPGRP
RAAVRTASGRAPVRAVHPGGGLRTWCRTCRGSWGRGLRLPGVRAGVRLPGRAGAGGPF
PACLKASADGHPGAFQTASPAPGTYPKSVSPASGLPAAFSTFEWMKVKRNASKKDSGL
GFVEETRSRANSMESASSTDSENVPGIEKISGRSSPWNFSWQTRRVWGR"
BASE COUNT 432 a 457 c 437 g 412 t
ORIGIN
1 gttggagagg gcagctcggg tagagagggc tggcggagcg gcgcagacgg cggcagtcct
61 gctcagcctc tgcccggctc cgtactccgg ccccggcctg cgcccgaccc tcgccttcgc
121 ccccggccgc ccccgcgcgg ccgtccgtac cgcctccggc cgcgccccag tacgcgcagt
181 gcaccctgga gggggcctac gaacctggtg ccgcacctgc cgcggcagct gggggcgcgg
241 actacggctt cctggggtcc gggccggcgt acgacttccc gggcgtgctg gggcgggcgg
301 cccttttccg gcttgtctca aagcgtcagc cgacggccac cctggtgctt tccagaccgc
361 atccccggcc ccaggcacct accccaagtc cgtctctccc gcctccggcc tccctgccgc
421 cttcagcacg ttcgagtgga tgaaagtgaa gaggaatgcc tctaagaaag acagcggttt
481 gggttttgtg gaggagacgc gttcccgggc gaattccatg gagtctgcct cgagtacaga
541 ttcggaaaat gtgccaggca ttgagaaaat ttcaggaagg agctctccgt ggaacttctc
601 ctggcaaact cgccgagtat ggggccgcta gcccctccag cgcgatccgc acgaatttca
661 gcaccaagca actgacagaa ctggaaaaag agtttcattt caataagtac ttaactcgag
721 cccggcgcat cgagatagcc aactgcttgc acctgaatga cacgcaagtc aaaatctggt
781 tccagaaccg caggatgaaa cagaagaaaa gggaacgaga agggcttctg gccacggcca
841 ttcctgtggc tcccctccaa cttcccctct ctggaacaac ccccactaag tttatcaaga
901 accccggcag cccttctcag tcccaagagc cttcgtgagg ccggtacttg gggccgaaaa
961 actgtggcct gcagaagtcc caggcgaccc ccatccctat ctagacttag gagctcagtt
1021 tgggatggag gtgggagaac aaaaatgaat agggatttca cttgggaaat gaagtacttt
1081 agttggcttc cgagttccag actatatgtc cagatattaa ttgactgtct tgtaagccac
1141 ttgtttggtt atgatttgtg tcttatcagg gaaaaggtgc ccagctgcca gcccagctcc
1201 gctgctatct ttgcctcact tagtcatgtg caattcgcgt tgcagagtgg cagaccatta
1261 gttgctgagt tctgtcagca ctctgatgtg ctcagaagag cacctgccca aagtttttct
1321 ggttttaatt taaaggacaa ggctacatat attcagcttt ttgagatgac caaagctagt
1381 tagggtctcc ttgatgtagc taagctgctt cagtgatctt cacatttgca ctccagtttt
1441 tttttcttta aaaaagcggt ttctacctct ctatgtgcct gagtgatgat acaatcgctg
1501 tttagttact agatgaacaa atccacagaa tgggtaaaga gtagaatctg aactatatct
1561 tgacaaatat tattcaaact tgaatgtaaa tatatacagt atgtatattt tttaaaaaga
1621 tttgcttgca atgaccttat aagtgacatt taatgtcata gcatgtaaag ggtttttttt
1681 gtaataaaaa ttatagaatc tgaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaa
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