LOCUS BC028178 3902 bp mRNA linear HUM 26-JUN-2008 DEFINITION Homo sapiens collagen, type III, alpha 1, mRNA (cDNA clone MGC:39848 IMAGE:5405119), complete cds. ACCESSION BC028178 VERSION BC028178.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 3902) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 3902) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (08-APR-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 62 Row: p Column: 11 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 15149480. FEATURES Location/Qualifiers source 1..3902 /db_xref="H-InvDB:HIT000040478" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:39848 IMAGE:5405119" /tissue_type="Liver, adenocarcinoma" /clone_lib="NIH_MGC_90" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..3902 /gene="COL3A1" /db_xref="GeneID:1281" /db_xref="HGNC:HGNC:2201" /db_xref="MIM:120180" CDS 116..3607 /gene="COL3A1" /codon_start=1 /product="COL3A1 protein" /protein_id="AAH28178.1" /db_xref="GeneID:1281" /db_xref="HGNC:HGNC:2201" /db_xref="MIM:120180" /translation="MMSFVQKGSWLLLALLHPTIILAQQEAVEGGCSHLGQSYADRDV WKPEPCQICVCDSGSVLCDDIICDDQELDCPNPEIPFGECCAVCPQPPTAPTRPPNGQ GPQGPKGDPGPPGIPGRNGDPGIPGQPGSPGSPGPPGICESCPTGPQNYSPQYDSYDV KSGVAVGGLAGYPGPAGPPGPPGPPGTSGHPGSPGSPGYQGPPGEPGQAGPSGPPGPP GAIGPSGPAGKDGESGRPGRPGERGLPGPPGIKGPAGIPGFPGMKGHRGFDGRNGEKG ETGAPGLKGENGLPGENGAPGPMGPRGAPGERGRPGLPGAAGARGNDGARGSDGQPGP PGPPGTAGFPGSPGAKGEVGPAGSPGSNGAPGQRGEPGPQGHAGAQGPPGPPGINGSP GGKGEMGPAGIPGAPGLMGARGPPGPAGANGAPGLRGGAGEPGKNGAKGEPGPRGERG EAGIPGVPGAKGEDGKDGSPGEPGANGLPGAAGERGAPGFRGPAGPNGIPGEKGPAGE RGAPGPAGPRGAAGEPGRDGVPGGPGMRGMPGSPGGPGSDGKPGPPGSQGESGRPGPP GPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPGPQGPPGKNGETGPQGPPGPTG PGGDKGDTGPPGPQGLQGLPGTGGPPGENGKPGEPGPKGDAGAPGAPGGKGDAGAPGE RGPPGLAGAPGLRGGAGPPGPEGGKGAAGPPGPPGAAGTPGLQGMPGERGGLGSPGPK GDKGEPGGPGADGVPGKDGPRGPTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGSPG ERGETGPPGPAGFPGAPGQNGEPGGKGERGAPGEKGEGGPPGVAGPPGKDGTSGHPGP IGPPGPRGNRGERGSEGSPGHPGQPGPPGPPGAPGPCCGGVGAAAIAGIGGEKAGGFA PYYGDEPMDFKINTDEIMTSLKSVNGQIESLISPDGSRKNPARNCRDLKFCHPELKSG EYWVDPNQGCKLDAIKVFCNMETGETCISANPLNVPRKHWWTDSSAEKKHVWFGESMD GGFQFSYGNPELPEDVLDVQLAFLRLLSSRASQNITYHCKNSIAYMDQASGNVKKALK LMGSNEGEFKAEGNSKFTYTVLEDGCTKHTGEWSKTVFEYRTRKAVRLPIVDIAPYDI GGPDQEFGVDVGPVCFL" BASE COUNT 953 a 940 c 1136 g 873 t ORIGIN 1 ccacgcgtcc ggacgggccc ggtgctgaag ggcagggaac aacttgatgg tgctactttg 61 aactgctttt cttttctcct ttttgcacaa agagtctcat gtctgatatt tagacatgat 121 gagctttgtg caaaagggga gctggctact tctcgctctg cttcatccca ctattatttt 181 ggcacaacag gaagctgttg aaggaggatg ttcccatctt ggtcagtcct atgcggatag 241 agatgtctgg aagccagaac catgccaaat atgtgtctgt gactcaggat ccgttctctg 301 cgatgacata atatgtgacg atcaagaatt agactgcccc aacccagaaa ttccatttgg 361 agaatgttgt gcagtttgcc cacagcctcc aactgctcct actcgccctc ctaatggtca 421 aggacctcaa ggccccaagg gagatccagg ccctcctggt attcctggga gaaatggtga 481 ccctggtatt ccaggacaac cagggtcccc tggttctcct ggcccccctg gaatctgtga 541 atcatgccct actggtcctc agaactattc tccccagtat gattcatatg atgtcaagtc 601 tggagtagca gtaggaggac tcgcaggcta tcctggacca gctggccccc caggccctcc 661 cggtccccct ggtacatctg gtcatcctgg ttcccctgga tctccaggat accaaggacc 721 ccctggtgaa cctgggcaag ctggtccttc aggccctcca ggacctcctg gtgctatagg 781 tccatctggt cctgctggaa aagatggaga atcaggtaga cccggacgac ctggagagcg 841 aggattgcct ggacctccag gtatcaaagg tccagctggg atacctggat tccctggtat 901 gaaaggacac agaggcttcg atggacgaaa tggagaaaag ggtgaaacag gtgctcctgg 961 attaaagggt gaaaatggtc ttccaggcga aaatggagct cctggaccca tgggtccaag 1021 aggggctcct ggtgagcgag gacggccagg acttcctggg gctgcaggtg ctcggggtaa 1081 tgacggtgct cgaggcagtg atggtcaacc aggccctcct ggtcctcctg gaactgccgg 1141 attccctgga tcccctggtg ctaagggtga agttggacct gcagggtctc ctggttcaaa 1201 tggtgcccct ggacaaagag gagaacctgg acctcaggga cacgctggtg ctcaaggtcc 1261 tcctggccct cctgggatta atggtagtcc tggtggtaaa ggcgaaatgg gtcccgctgg 1321 cattcctgga gctcctggac tgatgggagc ccggggtcct ccaggaccag ccggtgctaa 1381 tggtgctcct ggactgcgag gtggtgcagg tgagcctggt aagaatggtg ccaaaggaga 1441 gcccggacca cgtggtgaac gcggtgaggc tggtattcca ggtgttccag gagctaaagg 1501 cgaagatggc aaggatggat cacctggaga acctggtgca aatgggcttc caggagctgc 1561 aggagaaagg ggtgcccctg ggttccgagg acctgctgga ccaaatggca tcccaggaga 1621 aaagggtcct gctggagagc gtggtgctcc aggccctgca gggcccagag gagctgctgg 1681 agaacctggc agagatggcg tccctggagg tccaggaatg aggggcatgc ccggaagtcc 1741 aggaggacca ggaagtgatg ggaaaccagg gcctcccgga agtcaaggag aaagtggtcg 1801 accaggtcct cctgggccat ctggtccccg aggtcagcct ggtgtcatgg gcttccccgg 1861 tcctaaagga aatgatggtg ctcctggtaa gaatggagaa cgaggtggcc ctggaggacc 1921 tggccctcag ggtcctcctg gaaagaatgg tgaaactgga cctcagggac ccccagggcc 1981 tactgggcct ggtggtgaca aaggagacac aggaccccct ggtccacaag gattacaagg 2041 cttgcctggt acaggtggtc ctccaggaga aaatggaaaa cctggggaac caggtccaaa 2101 gggtgatgcc ggtgcacctg gagctccagg aggcaagggt gatgctggtg cccctggtga 2161 acgtggacct cctggattgg caggggcccc aggacttaga ggtggagctg gtccccctgg 2221 tcccgaagga ggaaagggtg ctgctggtcc tcctgggcca cctggtgctg ctggtactcc 2281 tggtctgcaa ggaatgcctg gagaaagagg aggtcttgga agtcctggtc caaagggtga 2341 caagggtgaa ccaggcggtc caggtgctga tggtgtccca gggaaagatg gcccaagggg 2401 tcctactggt cctattggtc ctcctggccc agctggccag cctggagata agggtgaagg 2461 tggtgccccc ggacttccag gtatagctgg acctcgtggt agccctggtg agagaggtga 2521 aactggccct ccaggacctg ctggtttccc tggtgctcct ggacagaatg gtgaacctgg 2581 tggtaaagga gaaagagggg ctccgggtga gaaaggtgaa ggaggccctc ctggagttgc 2641 aggacctcct ggcaaagatg gaaccagtgg acatccaggt cccattggac caccagggcc 2701 tcgaggtaac agaggtgaaa gaggatctga gggctcccca ggccacccag ggcaaccagg 2761 ccctcctgga cctcctggtg cccctggtcc ttgctgtggt ggtgttggag ccgctgccat 2821 tgctgggatt ggaggtgaaa aagctggcgg ttttgccccg tattatggag atgaaccaat 2881 ggatttcaaa atcaacaccg atgagattat gacttcactc aagtctgtta atggacaaat 2941 agaaagcctc attagtcctg atggttctcg taaaaacccc gctagaaact gcagagacct 3001 gaaattctgc catcctgaac tcaagagtgg agaatactgg gttgacccta accaaggatg 3061 caaattggat gctatcaagg tattctgtaa tatggaaact ggggaaacat gcataagtgc 3121 caatcctttg aatgttccac ggaaacactg gtggacagat tctagtgctg agaagaaaca 3181 cgtttggttt ggagagtcca tggatggtgg ttttcagttt agctacggca atcctgaact 3241 tcctgaagat gtccttgatg tgcagctggc attccttcga cttctctcca gccgagcttc 3301 ccagaacatc acatatcact gcaaaaatag cattgcatac atggatcagg ccagtggaaa 3361 tgtaaagaag gccctgaagc tgatggggtc aaatgaaggt gaattcaagg ctgaaggaaa 3421 tagcaaattc acctacacag ttctggagga tggttgcacg aaacacactg gggaatggag 3481 caaaacagtc tttgaatatc gaacacgcaa ggctgtgaga ctacctattg tagatattgc 3541 accctatgac attggtggtc ctgatcaaga atttggtgtg gacgttggcc ctgtttgctt 3601 tttataaacc aaactctatc tgaaatccca acaaaaaaaa tttaactcca tatgtgttcc 3661 tcttgttcta atcttgtcaa ccagtgcaag tgaccgacaa aattccagtt atttatttcc 3721 aaaatgtttg gaaacagtat aatttgacaa agaaaaatga tacttctctt tttttgctgt 3781 tccaccaaat acaattcaaa tgctttttgt tttatttttt taccaattcc aatttcaaaa 3841 tgtctcaatg gtgctataat aaataaactt caacactctt tatgataaaa aaaaaaaaaa 3901 aa //