LOCUS BC028178 3902 bp mRNA linear HUM 26-JUN-2008
DEFINITION Homo sapiens collagen, type III, alpha 1, mRNA (cDNA clone
MGC:39848 IMAGE:5405119), complete cds.
ACCESSION BC028178
VERSION BC028178.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3902)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3902)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (08-APR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 62 Row: p Column: 11
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 15149480.
FEATURES Location/Qualifiers
source 1..3902
/db_xref="H-InvDB:HIT000040478"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:39848 IMAGE:5405119"
/tissue_type="Liver, adenocarcinoma"
/clone_lib="NIH_MGC_90"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..3902
/gene="COL3A1"
/db_xref="GeneID:1281"
/db_xref="HGNC:HGNC:2201"
/db_xref="MIM:120180"
CDS 116..3607
/gene="COL3A1"
/codon_start=1
/product="COL3A1 protein"
/protein_id="AAH28178.1"
/db_xref="GeneID:1281"
/db_xref="HGNC:HGNC:2201"
/db_xref="MIM:120180"
/translation="MMSFVQKGSWLLLALLHPTIILAQQEAVEGGCSHLGQSYADRDV
WKPEPCQICVCDSGSVLCDDIICDDQELDCPNPEIPFGECCAVCPQPPTAPTRPPNGQ
GPQGPKGDPGPPGIPGRNGDPGIPGQPGSPGSPGPPGICESCPTGPQNYSPQYDSYDV
KSGVAVGGLAGYPGPAGPPGPPGPPGTSGHPGSPGSPGYQGPPGEPGQAGPSGPPGPP
GAIGPSGPAGKDGESGRPGRPGERGLPGPPGIKGPAGIPGFPGMKGHRGFDGRNGEKG
ETGAPGLKGENGLPGENGAPGPMGPRGAPGERGRPGLPGAAGARGNDGARGSDGQPGP
PGPPGTAGFPGSPGAKGEVGPAGSPGSNGAPGQRGEPGPQGHAGAQGPPGPPGINGSP
GGKGEMGPAGIPGAPGLMGARGPPGPAGANGAPGLRGGAGEPGKNGAKGEPGPRGERG
EAGIPGVPGAKGEDGKDGSPGEPGANGLPGAAGERGAPGFRGPAGPNGIPGEKGPAGE
RGAPGPAGPRGAAGEPGRDGVPGGPGMRGMPGSPGGPGSDGKPGPPGSQGESGRPGPP
GPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPGPQGPPGKNGETGPQGPPGPTG
PGGDKGDTGPPGPQGLQGLPGTGGPPGENGKPGEPGPKGDAGAPGAPGGKGDAGAPGE
RGPPGLAGAPGLRGGAGPPGPEGGKGAAGPPGPPGAAGTPGLQGMPGERGGLGSPGPK
GDKGEPGGPGADGVPGKDGPRGPTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGSPG
ERGETGPPGPAGFPGAPGQNGEPGGKGERGAPGEKGEGGPPGVAGPPGKDGTSGHPGP
IGPPGPRGNRGERGSEGSPGHPGQPGPPGPPGAPGPCCGGVGAAAIAGIGGEKAGGFA
PYYGDEPMDFKINTDEIMTSLKSVNGQIESLISPDGSRKNPARNCRDLKFCHPELKSG
EYWVDPNQGCKLDAIKVFCNMETGETCISANPLNVPRKHWWTDSSAEKKHVWFGESMD
GGFQFSYGNPELPEDVLDVQLAFLRLLSSRASQNITYHCKNSIAYMDQASGNVKKALK
LMGSNEGEFKAEGNSKFTYTVLEDGCTKHTGEWSKTVFEYRTRKAVRLPIVDIAPYDI
GGPDQEFGVDVGPVCFL"
BASE COUNT 953 a 940 c 1136 g 873 t
ORIGIN
1 ccacgcgtcc ggacgggccc ggtgctgaag ggcagggaac aacttgatgg tgctactttg
61 aactgctttt cttttctcct ttttgcacaa agagtctcat gtctgatatt tagacatgat
121 gagctttgtg caaaagggga gctggctact tctcgctctg cttcatccca ctattatttt
181 ggcacaacag gaagctgttg aaggaggatg ttcccatctt ggtcagtcct atgcggatag
241 agatgtctgg aagccagaac catgccaaat atgtgtctgt gactcaggat ccgttctctg
301 cgatgacata atatgtgacg atcaagaatt agactgcccc aacccagaaa ttccatttgg
361 agaatgttgt gcagtttgcc cacagcctcc aactgctcct actcgccctc ctaatggtca
421 aggacctcaa ggccccaagg gagatccagg ccctcctggt attcctggga gaaatggtga
481 ccctggtatt ccaggacaac cagggtcccc tggttctcct ggcccccctg gaatctgtga
541 atcatgccct actggtcctc agaactattc tccccagtat gattcatatg atgtcaagtc
601 tggagtagca gtaggaggac tcgcaggcta tcctggacca gctggccccc caggccctcc
661 cggtccccct ggtacatctg gtcatcctgg ttcccctgga tctccaggat accaaggacc
721 ccctggtgaa cctgggcaag ctggtccttc aggccctcca ggacctcctg gtgctatagg
781 tccatctggt cctgctggaa aagatggaga atcaggtaga cccggacgac ctggagagcg
841 aggattgcct ggacctccag gtatcaaagg tccagctggg atacctggat tccctggtat
901 gaaaggacac agaggcttcg atggacgaaa tggagaaaag ggtgaaacag gtgctcctgg
961 attaaagggt gaaaatggtc ttccaggcga aaatggagct cctggaccca tgggtccaag
1021 aggggctcct ggtgagcgag gacggccagg acttcctggg gctgcaggtg ctcggggtaa
1081 tgacggtgct cgaggcagtg atggtcaacc aggccctcct ggtcctcctg gaactgccgg
1141 attccctgga tcccctggtg ctaagggtga agttggacct gcagggtctc ctggttcaaa
1201 tggtgcccct ggacaaagag gagaacctgg acctcaggga cacgctggtg ctcaaggtcc
1261 tcctggccct cctgggatta atggtagtcc tggtggtaaa ggcgaaatgg gtcccgctgg
1321 cattcctgga gctcctggac tgatgggagc ccggggtcct ccaggaccag ccggtgctaa
1381 tggtgctcct ggactgcgag gtggtgcagg tgagcctggt aagaatggtg ccaaaggaga
1441 gcccggacca cgtggtgaac gcggtgaggc tggtattcca ggtgttccag gagctaaagg
1501 cgaagatggc aaggatggat cacctggaga acctggtgca aatgggcttc caggagctgc
1561 aggagaaagg ggtgcccctg ggttccgagg acctgctgga ccaaatggca tcccaggaga
1621 aaagggtcct gctggagagc gtggtgctcc aggccctgca gggcccagag gagctgctgg
1681 agaacctggc agagatggcg tccctggagg tccaggaatg aggggcatgc ccggaagtcc
1741 aggaggacca ggaagtgatg ggaaaccagg gcctcccgga agtcaaggag aaagtggtcg
1801 accaggtcct cctgggccat ctggtccccg aggtcagcct ggtgtcatgg gcttccccgg
1861 tcctaaagga aatgatggtg ctcctggtaa gaatggagaa cgaggtggcc ctggaggacc
1921 tggccctcag ggtcctcctg gaaagaatgg tgaaactgga cctcagggac ccccagggcc
1981 tactgggcct ggtggtgaca aaggagacac aggaccccct ggtccacaag gattacaagg
2041 cttgcctggt acaggtggtc ctccaggaga aaatggaaaa cctggggaac caggtccaaa
2101 gggtgatgcc ggtgcacctg gagctccagg aggcaagggt gatgctggtg cccctggtga
2161 acgtggacct cctggattgg caggggcccc aggacttaga ggtggagctg gtccccctgg
2221 tcccgaagga ggaaagggtg ctgctggtcc tcctgggcca cctggtgctg ctggtactcc
2281 tggtctgcaa ggaatgcctg gagaaagagg aggtcttgga agtcctggtc caaagggtga
2341 caagggtgaa ccaggcggtc caggtgctga tggtgtccca gggaaagatg gcccaagggg
2401 tcctactggt cctattggtc ctcctggccc agctggccag cctggagata agggtgaagg
2461 tggtgccccc ggacttccag gtatagctgg acctcgtggt agccctggtg agagaggtga
2521 aactggccct ccaggacctg ctggtttccc tggtgctcct ggacagaatg gtgaacctgg
2581 tggtaaagga gaaagagggg ctccgggtga gaaaggtgaa ggaggccctc ctggagttgc
2641 aggacctcct ggcaaagatg gaaccagtgg acatccaggt cccattggac caccagggcc
2701 tcgaggtaac agaggtgaaa gaggatctga gggctcccca ggccacccag ggcaaccagg
2761 ccctcctgga cctcctggtg cccctggtcc ttgctgtggt ggtgttggag ccgctgccat
2821 tgctgggatt ggaggtgaaa aagctggcgg ttttgccccg tattatggag atgaaccaat
2881 ggatttcaaa atcaacaccg atgagattat gacttcactc aagtctgtta atggacaaat
2941 agaaagcctc attagtcctg atggttctcg taaaaacccc gctagaaact gcagagacct
3001 gaaattctgc catcctgaac tcaagagtgg agaatactgg gttgacccta accaaggatg
3061 caaattggat gctatcaagg tattctgtaa tatggaaact ggggaaacat gcataagtgc
3121 caatcctttg aatgttccac ggaaacactg gtggacagat tctagtgctg agaagaaaca
3181 cgtttggttt ggagagtcca tggatggtgg ttttcagttt agctacggca atcctgaact
3241 tcctgaagat gtccttgatg tgcagctggc attccttcga cttctctcca gccgagcttc
3301 ccagaacatc acatatcact gcaaaaatag cattgcatac atggatcagg ccagtggaaa
3361 tgtaaagaag gccctgaagc tgatggggtc aaatgaaggt gaattcaagg ctgaaggaaa
3421 tagcaaattc acctacacag ttctggagga tggttgcacg aaacacactg gggaatggag
3481 caaaacagtc tttgaatatc gaacacgcaa ggctgtgaga ctacctattg tagatattgc
3541 accctatgac attggtggtc ctgatcaaga atttggtgtg gacgttggcc ctgtttgctt
3601 tttataaacc aaactctatc tgaaatccca acaaaaaaaa tttaactcca tatgtgttcc
3661 tcttgttcta atcttgtcaa ccagtgcaag tgaccgacaa aattccagtt atttatttcc
3721 aaaatgtttg gaaacagtat aatttgacaa agaaaaatga tacttctctt tttttgctgt
3781 tccaccaaat acaattcaaa tgctttttgt tttatttttt taccaattcc aatttcaaaa
3841 tgtctcaatg gtgctataat aaataaactt caacactctt tatgataaaa aaaaaaaaaa
3901 aa
//