LOCUS BC027912 2805 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens cadherin 16, KSP-cadherin, mRNA (cDNA clone MGC:34498 IMAGE:5206766), complete cds. ACCESSION BC027912 VERSION BC027912.2 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2805) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2805) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (08-APR-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT On Sep 16, 2003 this sequence version replaced BC027912.1. Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Life Technologies, Inc. cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 49 Row: h Column: 11 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 16507958. FEATURES Location/Qualifiers source 1..2805 /db_xref="H-InvDB:HIT000040349" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:34498 IMAGE:5206766" /tissue_type="Lung, Spleen, fetal, pooled" /clone_lib="NIH_MGC_122" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..2805 /gene="CDH16" /db_xref="GeneID:1014" /db_xref="HGNC:HGNC:1755" /db_xref="MIM:603118" CDS 14..2503 /gene="CDH16" /codon_start=1 /product="cadherin 16, KSP-cadherin" /protein_id="AAH27912.1" /db_xref="GeneID:1014" /db_xref="HGNC:HGNC:1755" /db_xref="MIM:603118" /translation="MVPAWLWLLCVSVPQALPKAQPAELSVEVPENYGGNFPLYLTKL PLPREGAEGQIVLSGDSGKATEGPFAMDPDSGFLLVTRALDREEQAEYQLQVTLEMQD GHVLWGPQPVLVHVKDENDQVPHFSQAIYRARLSRGTRPGIPFLFLEASDRDEPGTAN SDLRFHILSQAPAQPSPDMFQLEPRLGALALSPKGSTSLDHALERTYQLLVQVKDMGD QASGHQATATVEVSIIESTWVSLEPIHLAENLKVLYPHHMAQVHWSGGDVHYHLESHP PGPFEVNAEGNLYVTRELDREAQAEYLLQVRAQNSHGEDYAAPLELHVLVMDENDNVP ICPPRDPTVSIPELSPPGTEVTRLSAEDADAPGSPNSHVVYQLLSPEPEDGVEGRAFQ VDPTSGSVTLGVLPLRAGQNILLLVLAMDLAGAEGGFSSTCEVEVAVTDINDHAPEFI TSQIGPISLPEDVEPGTLVAMLTAIDADLEPAFRLMDFAIERGDTEGTFGLDWEPDSG HVRLRLCKNLSYEAAPSHEVVVVVQSVAKLVGPGPGPGATATVTVLVERVMPPPKLDQ ESYEASVPISAPAGSFLLTIQPSDPISRTLRFSLVNDSEGWLCIEKFSGEVHTAQSLQ GAQPGDTYTVLVEAQDTDEPRLSASAPLVIHFLKAPPAPALTLAPVPSQYLCTPRQDH GLIVSGPSKDPDLASGHGPYSFTLGPNPTVQRDWRLQTLNGSHAYLTLALHWVEPREH IIPVVVSHNAQMWQLLVRVIVCRCNVEGQCMRKVGRMKGMPTKLSAVGILVGTLVAIG IFLILIFTHWTMSRKKDPDQPADSVPLKATV" BASE COUNT 602 a 859 c 808 g 536 t ORIGIN 1 gcctgtcctg accatggtcc ctgcctggct gtggctgctt tgtgtctccg tcccccaggc 61 tctccccaag gcccagcctg cagagctgtc tgtggaagtt ccagaaaact atggtggaaa 121 tttcccttta tacctgacca agttgccgct gccccgtgag ggggctgaag gccagatcgt 181 gctgtcaggg gactcaggca aggcaactga gggcccattt gctatggatc cagattctgg 241 cttcctgctg gtgaccaggg ccctggaccg agaggagcag gcagagtacc agctacaggt 301 caccctggag atgcaggatg gacatgtctt gtggggtcca cagcctgtgc ttgtgcacgt 361 gaaggatgag aatgaccagg tgccccattt ctctcaagcc atctacagag ctcggctgag 421 ccggggtacc aggcctggca tccccttcct cttccttgag gcttcagacc gggatgagcc 481 aggcacagcc aactcggatc ttcgattcca catcctgagc caggctccag cccagccttc 541 cccagacatg ttccagctgg agcctcggct gggggctctg gccctcagcc ccaaggggag 601 caccagcctt gaccacgccc tggagaggac ctaccagctg ttggtacagg tcaaggacat 661 gggtgaccag gcctcaggcc accaggccac tgccaccgtg gaagtctcca tcatagagag 721 cacctgggtg tccctagagc ctatccacct ggcagagaat ctcaaagtcc tatacccgca 781 ccacatggcc caggtacact ggagtggggg tgatgtgcac tatcacctgg agagccatcc 841 cccgggaccc tttgaagtga atgcagaggg aaacctctac gtgaccagag agctggacag 901 agaagcccag gctgagtacc tgctccaggt gcgggctcag aattcccatg gcgaggacta 961 tgcggcccct ctggagctgc acgtgctggt gatggatgag aatgacaacg tgcctatctg 1021 ccctccccgt gaccccacag tcagcatccc tgagctcagt ccaccaggta ctgaagtgac 1081 tagactgtca gcagaggatg cagatgcccc cggctccccc aattcccacg ttgtgtatca 1141 gctcctgagc cctgagcctg aggatggggt agaggggaga gccttccagg tggaccccac 1201 ttcaggcagt gtgacgctgg gggtgctccc actccgagca ggccagaaca tcctgcttct 1261 ggtgctggcc atggacctgg caggcgcaga gggtggcttc agcagcacgt gtgaagtcga 1321 agtcgcagtc acagatatca atgatcacgc ccctgagttc atcacttccc agattgggcc 1381 tataagcctc cctgaggatg tggagcccgg gactctggtg gccatgctaa cagccattga 1441 tgctgacctc gagcccgcct tccgcctcat ggattttgcc attgagaggg gagacacaga 1501 agggactttt ggcctggatt gggagccaga ctctgggcat gttagactca gactctgcaa 1561 gaacctcagt tatgaggcag ctccaagtca tgaggtggtg gtggtggtgc agagtgtggc 1621 gaagctggtg gggccaggcc caggccctgg agccaccgcc acggtgactg tgctagtgga 1681 gagagtgatg ccacccccca agttggacca ggagagctac gaggccagtg tccccatcag 1741 tgccccagcc ggctctttcc tgctgaccat ccagccctcc gaccccatca gccgaaccct 1801 caggttctcc ctagtcaatg actcagaggg ctggctctgc attgagaaat tctccgggga 1861 ggtgcacacc gcccagtccc tgcagggcgc ccagcctggg gacacctaca cggtgcttgt 1921 ggaggcccag gatacagatg agccgagact gagcgcttct gcacccctgg tgatccactt 1981 cctaaaggcc cctcctgccc cagccctgac tcttgcccct gtgccctccc aatacctctg 2041 cacaccccgc caagaccatg gcttgatcgt gagtggaccc agcaaggacc ccgatctggc 2101 cagtgggcac ggtccctaca gcttcaccct tggtcccaac cccacggtgc aacgggattg 2161 gcgcctccag actctcaatg gttcccatgc ctacctcacc ttggccctgc attgggtgga 2221 gccacgtgaa cacataatcc ccgtggtggt cagccacaat gcccagatgt ggcagctcct 2281 ggttcgagtg atcgtgtgtc gctgcaacgt ggaggggcag tgcatgcgca aggtgggccg 2341 catgaagggc atgcccacga agctgtcggc agtgggcatc cttgtaggca ccctggtagc 2401 aataggaatc ttcctcatcc tcattttcac ccactggacc atgtcaagga agaaggaccc 2461 ggatcaacca gcagacagcg tgcccctgaa ggcgactgtc tgaatggccc aggcagctct 2521 agctgggagc ttggcctctg gctccatctg agtcccctgg gagagagccc agcacccaag 2581 atccagcagg ggacaggaca gagtagaagc ccctccatct gccctggggt ggaggcacca 2641 tcaccatcac caggcatgtc tgcagagcct ggacaccaac tttatggact gcccatggga 2701 gtgctccaaa tgtcagggtg tttgcccaat aataaagccc cagagaactg ggctgggccc 2761 tatgggattg gtaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaa //