LOCUS BC027912 2805 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens cadherin 16, KSP-cadherin, mRNA (cDNA clone MGC:34498
IMAGE:5206766), complete cds.
ACCESSION BC027912
VERSION BC027912.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2805)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2805)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (08-APR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Sep 16, 2003 this sequence version replaced BC027912.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 49 Row: h Column: 11
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 16507958.
FEATURES Location/Qualifiers
source 1..2805
/db_xref="H-InvDB:HIT000040349"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:34498 IMAGE:5206766"
/tissue_type="Lung, Spleen, fetal, pooled"
/clone_lib="NIH_MGC_122"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2805
/gene="CDH16"
/db_xref="GeneID:1014"
/db_xref="HGNC:HGNC:1755"
/db_xref="MIM:603118"
CDS 14..2503
/gene="CDH16"
/codon_start=1
/product="cadherin 16, KSP-cadherin"
/protein_id="AAH27912.1"
/db_xref="GeneID:1014"
/db_xref="HGNC:HGNC:1755"
/db_xref="MIM:603118"
/translation="MVPAWLWLLCVSVPQALPKAQPAELSVEVPENYGGNFPLYLTKL
PLPREGAEGQIVLSGDSGKATEGPFAMDPDSGFLLVTRALDREEQAEYQLQVTLEMQD
GHVLWGPQPVLVHVKDENDQVPHFSQAIYRARLSRGTRPGIPFLFLEASDRDEPGTAN
SDLRFHILSQAPAQPSPDMFQLEPRLGALALSPKGSTSLDHALERTYQLLVQVKDMGD
QASGHQATATVEVSIIESTWVSLEPIHLAENLKVLYPHHMAQVHWSGGDVHYHLESHP
PGPFEVNAEGNLYVTRELDREAQAEYLLQVRAQNSHGEDYAAPLELHVLVMDENDNVP
ICPPRDPTVSIPELSPPGTEVTRLSAEDADAPGSPNSHVVYQLLSPEPEDGVEGRAFQ
VDPTSGSVTLGVLPLRAGQNILLLVLAMDLAGAEGGFSSTCEVEVAVTDINDHAPEFI
TSQIGPISLPEDVEPGTLVAMLTAIDADLEPAFRLMDFAIERGDTEGTFGLDWEPDSG
HVRLRLCKNLSYEAAPSHEVVVVVQSVAKLVGPGPGPGATATVTVLVERVMPPPKLDQ
ESYEASVPISAPAGSFLLTIQPSDPISRTLRFSLVNDSEGWLCIEKFSGEVHTAQSLQ
GAQPGDTYTVLVEAQDTDEPRLSASAPLVIHFLKAPPAPALTLAPVPSQYLCTPRQDH
GLIVSGPSKDPDLASGHGPYSFTLGPNPTVQRDWRLQTLNGSHAYLTLALHWVEPREH
IIPVVVSHNAQMWQLLVRVIVCRCNVEGQCMRKVGRMKGMPTKLSAVGILVGTLVAIG
IFLILIFTHWTMSRKKDPDQPADSVPLKATV"
BASE COUNT 602 a 859 c 808 g 536 t
ORIGIN
1 gcctgtcctg accatggtcc ctgcctggct gtggctgctt tgtgtctccg tcccccaggc
61 tctccccaag gcccagcctg cagagctgtc tgtggaagtt ccagaaaact atggtggaaa
121 tttcccttta tacctgacca agttgccgct gccccgtgag ggggctgaag gccagatcgt
181 gctgtcaggg gactcaggca aggcaactga gggcccattt gctatggatc cagattctgg
241 cttcctgctg gtgaccaggg ccctggaccg agaggagcag gcagagtacc agctacaggt
301 caccctggag atgcaggatg gacatgtctt gtggggtcca cagcctgtgc ttgtgcacgt
361 gaaggatgag aatgaccagg tgccccattt ctctcaagcc atctacagag ctcggctgag
421 ccggggtacc aggcctggca tccccttcct cttccttgag gcttcagacc gggatgagcc
481 aggcacagcc aactcggatc ttcgattcca catcctgagc caggctccag cccagccttc
541 cccagacatg ttccagctgg agcctcggct gggggctctg gccctcagcc ccaaggggag
601 caccagcctt gaccacgccc tggagaggac ctaccagctg ttggtacagg tcaaggacat
661 gggtgaccag gcctcaggcc accaggccac tgccaccgtg gaagtctcca tcatagagag
721 cacctgggtg tccctagagc ctatccacct ggcagagaat ctcaaagtcc tatacccgca
781 ccacatggcc caggtacact ggagtggggg tgatgtgcac tatcacctgg agagccatcc
841 cccgggaccc tttgaagtga atgcagaggg aaacctctac gtgaccagag agctggacag
901 agaagcccag gctgagtacc tgctccaggt gcgggctcag aattcccatg gcgaggacta
961 tgcggcccct ctggagctgc acgtgctggt gatggatgag aatgacaacg tgcctatctg
1021 ccctccccgt gaccccacag tcagcatccc tgagctcagt ccaccaggta ctgaagtgac
1081 tagactgtca gcagaggatg cagatgcccc cggctccccc aattcccacg ttgtgtatca
1141 gctcctgagc cctgagcctg aggatggggt agaggggaga gccttccagg tggaccccac
1201 ttcaggcagt gtgacgctgg gggtgctccc actccgagca ggccagaaca tcctgcttct
1261 ggtgctggcc atggacctgg caggcgcaga gggtggcttc agcagcacgt gtgaagtcga
1321 agtcgcagtc acagatatca atgatcacgc ccctgagttc atcacttccc agattgggcc
1381 tataagcctc cctgaggatg tggagcccgg gactctggtg gccatgctaa cagccattga
1441 tgctgacctc gagcccgcct tccgcctcat ggattttgcc attgagaggg gagacacaga
1501 agggactttt ggcctggatt gggagccaga ctctgggcat gttagactca gactctgcaa
1561 gaacctcagt tatgaggcag ctccaagtca tgaggtggtg gtggtggtgc agagtgtggc
1621 gaagctggtg gggccaggcc caggccctgg agccaccgcc acggtgactg tgctagtgga
1681 gagagtgatg ccacccccca agttggacca ggagagctac gaggccagtg tccccatcag
1741 tgccccagcc ggctctttcc tgctgaccat ccagccctcc gaccccatca gccgaaccct
1801 caggttctcc ctagtcaatg actcagaggg ctggctctgc attgagaaat tctccgggga
1861 ggtgcacacc gcccagtccc tgcagggcgc ccagcctggg gacacctaca cggtgcttgt
1921 ggaggcccag gatacagatg agccgagact gagcgcttct gcacccctgg tgatccactt
1981 cctaaaggcc cctcctgccc cagccctgac tcttgcccct gtgccctccc aatacctctg
2041 cacaccccgc caagaccatg gcttgatcgt gagtggaccc agcaaggacc ccgatctggc
2101 cagtgggcac ggtccctaca gcttcaccct tggtcccaac cccacggtgc aacgggattg
2161 gcgcctccag actctcaatg gttcccatgc ctacctcacc ttggccctgc attgggtgga
2221 gccacgtgaa cacataatcc ccgtggtggt cagccacaat gcccagatgt ggcagctcct
2281 ggttcgagtg atcgtgtgtc gctgcaacgt ggaggggcag tgcatgcgca aggtgggccg
2341 catgaagggc atgcccacga agctgtcggc agtgggcatc cttgtaggca ccctggtagc
2401 aataggaatc ttcctcatcc tcattttcac ccactggacc atgtcaagga agaaggaccc
2461 ggatcaacca gcagacagcg tgcccctgaa ggcgactgtc tgaatggccc aggcagctct
2521 agctgggagc ttggcctctg gctccatctg agtcccctgg gagagagccc agcacccaag
2581 atccagcagg ggacaggaca gagtagaagc ccctccatct gccctggggt ggaggcacca
2641 tcaccatcac caggcatgtc tgcagagcct ggacaccaac tttatggact gcccatggga
2701 gtgctccaaa tgtcagggtg tttgcccaat aataaagccc cagagaactg ggctgggccc
2761 tatgggattg gtaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaa
//