LOCUS BC027721 1547 bp mRNA linear HUM 23-DEC-2003 DEFINITION Homo sapiens solute carrier family 38, member 5, mRNA (cDNA clone IMAGE:4649053), partial cds. ACCESSION BC027721 VERSION BC027721.2 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1547) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1547) AUTHORS Strausberg,R. TITLE Direct Submission JOURNAL Submitted (08-APR-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Cancer Genomics Office, National Cancer Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT On Dec 19, 2003 this sequence version replaced BC027721.1. Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 33 Row: g Column: 11 This clone was selected for full length sequencing because it passed the following selection criteria: Hexamer frequency ORF analysis. FEATURES Location/Qualifiers source 1..1547 /db_xref="H-InvDB:HIT000091374" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="IMAGE:4649053" /tissue_type="Eye, retinoblastoma" /clone_lib="NIH_MGC_16" /lab_host="DH10B-R" /note="Vector: pOTB7" gene <1..1547 /gene="SLC38A5" /gene_synonym="JM24" /gene_synonym="SN2" /db_xref="GeneID:92745" CDS <1..1138 /gene="SLC38A5" /gene_synonym="JM24" /gene_synonym="SN2" /codon_start=2 /product="SLC38A5 protein" /protein_id="AAH27721.1" /db_xref="GeneID:92745" /translation="SIHLLLTCAGIAGIRAYEQLGQRAFGPAGKVVVATVICLHNVGA MSSYLFIIKSELPLVIGTFLYMDPEGDWFLKGNLLIIIVSVLIILPLALMKHLGYLGY TSGLSLTCMLFFLVSVIYKKFQLGCAIGHNETAMESEALVGLPSQGLNSSCEAQMFTV DSQMSYTVPIMAFAFVCHPEVLPIYTELCRPSKRRMQAVANVSIGAMFCMYGLTATFG YLTFYSSVKAEMLHMYSQKDPLILCVRLAVLLAVTLTVPVVLFPIRRALQQLLFPGKA FSWPRHVAIALILLVLVNVLVICVPTIRDIFGVIGSTSAPSLIFILPSIFYLRIVPSE VEPFLSWPKIQALCFGVLGVLFMAVSLGFMFANWATGQSRMSGH" misc_feature 2..1105 /gene="SLC38A5" /gene_synonym="JM24" /gene_synonym="SN2" /note="Aa_trans; Region: Transmembrane amino acid transporter protein. This transmembrane region is found in many amino acid transporters including UNC-47 and MTR. UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT). UNC-47 is predicted to have 10 transmembrane domains. MTR is a N system amino acid transporter system protein involved in methyltryptophan resistance. Other members of this family include proline transporters and amino acid permeases" /db_xref="CDD:pfam01490" BASE COUNT 308 a 456 c 424 g 359 t ORIGIN 1 ctccatccac ctcctgctga cctgtgctgg tattgcaggc atccgagcct atgagcagct 61 gggacagagg gcattcgggc ctgcggggaa ggtagtggtg gccacagtca tctgtctgca 121 caatgttggg gccatgtcca gttacctgtt catcatcaaa tctgagctcc ccctggttat 181 cggcaccttc ctgtacatgg accccgaggg ggactggttc ttgaagggaa acctcctcat 241 catcatcgtc agtgtgttaa tcatcctgcc cctcgccctc atgaaacact tgggctacct 301 ggggtacacc agtggtctct ctctgacctg catgctgttt ttccttgttt cggtcatcta 361 caagaagttc caacttggct gtgctatagg ccacaatgaa acagcaatgg agagtgaagc 421 tctcgtggga ctccccagcc aaggactcaa cagcagctgt gaggcccaga tgttcacagt 481 tgactcacag atgtcctaca cagtgcccat tatggctttt gcttttgtct gccaccctga 541 ggtgctgccc atctatacgg agctctgccg gccctccaag cgcaggatgc aggccgtggc 601 caacgtgtcc attggggcca tgttctgcat gtatgggctc acagcaacct ttggatacct 661 caccttctac agcagtgtga aggcggagat gctgcacatg tacagccaga aggacccgct 721 catcctctgt gtgcgcctgg ccgtgctgct cgcggtgacc ctcactgtgc cagtcgtgct 781 gttccctatc cgccgggccc tgcagcagct gcttttccca ggcaaggcct tcagctggcc 841 acgacatgtg gccatagctc tgatcctgct tgttttggtc aatgtccttg tcatctgtgt 901 gccaaccatc cgggatatct ttggagttat cgggtccacc tcagccccca gcctcatctt 961 catcctcccc agcatcttct acctccgcat tgtaccctct gaggtggagc ctttcttatc 1021 ctggcccaag atccaggccc tgtgctttgg agtcctggga gtcctcttca tggccgtcag 1081 tctaggcttt atgtttgcca actgggccac aggccagagc cgcatgtctg gacactgatc 1141 aggccctgct ggcccaggtc cctgtgcgca tgcacatgga ggggtcaggg ccgctcccta 1201 gggtccctcc tgcccaacat gtggaggtgg ctggttccca tgaacgtggt tgtcagaggc 1261 gggggacagc agaggctgca gactggccca cttccctcct ccccagggat gccaagcttg 1321 gatcatggcc ctaatcccaa ccccaacccc atgggaggag gaggaggagg aagaagagga 1381 ggaggaggag gaggaggagg aggaggagga ggaggccagg tcctggtgga gcctttgccc 1441 agcccagtcc tctctgcctc ctcctggctg aagctgtttg tcaggattac cctcgggcta 1501 aagaggaaaa ataaagatgt tgagctacca aaaaaaaaaa aaaaaaa //