LOCUS BC027721 1547 bp mRNA linear HUM 23-DEC-2003
DEFINITION Homo sapiens solute carrier family 38, member 5, mRNA (cDNA clone
IMAGE:4649053), partial cds.
ACCESSION BC027721
VERSION BC027721.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1547)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1547)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (08-APR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Dec 19, 2003 this sequence version replaced BC027721.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 33 Row: g Column: 11
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis.
FEATURES Location/Qualifiers
source 1..1547
/db_xref="H-InvDB:HIT000091374"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4649053"
/tissue_type="Eye, retinoblastoma"
/clone_lib="NIH_MGC_16"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..1547
/gene="SLC38A5"
/gene_synonym="JM24"
/gene_synonym="SN2"
/db_xref="GeneID:92745"
CDS <1..1138
/gene="SLC38A5"
/gene_synonym="JM24"
/gene_synonym="SN2"
/codon_start=2
/product="SLC38A5 protein"
/protein_id="AAH27721.1"
/db_xref="GeneID:92745"
/translation="SIHLLLTCAGIAGIRAYEQLGQRAFGPAGKVVVATVICLHNVGA
MSSYLFIIKSELPLVIGTFLYMDPEGDWFLKGNLLIIIVSVLIILPLALMKHLGYLGY
TSGLSLTCMLFFLVSVIYKKFQLGCAIGHNETAMESEALVGLPSQGLNSSCEAQMFTV
DSQMSYTVPIMAFAFVCHPEVLPIYTELCRPSKRRMQAVANVSIGAMFCMYGLTATFG
YLTFYSSVKAEMLHMYSQKDPLILCVRLAVLLAVTLTVPVVLFPIRRALQQLLFPGKA
FSWPRHVAIALILLVLVNVLVICVPTIRDIFGVIGSTSAPSLIFILPSIFYLRIVPSE
VEPFLSWPKIQALCFGVLGVLFMAVSLGFMFANWATGQSRMSGH"
misc_feature 2..1105
/gene="SLC38A5"
/gene_synonym="JM24"
/gene_synonym="SN2"
/note="Aa_trans; Region: Transmembrane amino acid
transporter protein. This transmembrane region is found in
many amino acid transporters including UNC-47 and MTR.
UNC-47 encodes a vesicular amino butyric acid (GABA)
transporter, (VGAT). UNC-47 is predicted to have 10
transmembrane domains. MTR is a N system amino acid
transporter system protein involved in methyltryptophan
resistance. Other members of this family include proline
transporters and amino acid permeases"
/db_xref="CDD:pfam01490"
BASE COUNT 308 a 456 c 424 g 359 t
ORIGIN
1 ctccatccac ctcctgctga cctgtgctgg tattgcaggc atccgagcct atgagcagct
61 gggacagagg gcattcgggc ctgcggggaa ggtagtggtg gccacagtca tctgtctgca
121 caatgttggg gccatgtcca gttacctgtt catcatcaaa tctgagctcc ccctggttat
181 cggcaccttc ctgtacatgg accccgaggg ggactggttc ttgaagggaa acctcctcat
241 catcatcgtc agtgtgttaa tcatcctgcc cctcgccctc atgaaacact tgggctacct
301 ggggtacacc agtggtctct ctctgacctg catgctgttt ttccttgttt cggtcatcta
361 caagaagttc caacttggct gtgctatagg ccacaatgaa acagcaatgg agagtgaagc
421 tctcgtggga ctccccagcc aaggactcaa cagcagctgt gaggcccaga tgttcacagt
481 tgactcacag atgtcctaca cagtgcccat tatggctttt gcttttgtct gccaccctga
541 ggtgctgccc atctatacgg agctctgccg gccctccaag cgcaggatgc aggccgtggc
601 caacgtgtcc attggggcca tgttctgcat gtatgggctc acagcaacct ttggatacct
661 caccttctac agcagtgtga aggcggagat gctgcacatg tacagccaga aggacccgct
721 catcctctgt gtgcgcctgg ccgtgctgct cgcggtgacc ctcactgtgc cagtcgtgct
781 gttccctatc cgccgggccc tgcagcagct gcttttccca ggcaaggcct tcagctggcc
841 acgacatgtg gccatagctc tgatcctgct tgttttggtc aatgtccttg tcatctgtgt
901 gccaaccatc cgggatatct ttggagttat cgggtccacc tcagccccca gcctcatctt
961 catcctcccc agcatcttct acctccgcat tgtaccctct gaggtggagc ctttcttatc
1021 ctggcccaag atccaggccc tgtgctttgg agtcctggga gtcctcttca tggccgtcag
1081 tctaggcttt atgtttgcca actgggccac aggccagagc cgcatgtctg gacactgatc
1141 aggccctgct ggcccaggtc cctgtgcgca tgcacatgga ggggtcaggg ccgctcccta
1201 gggtccctcc tgcccaacat gtggaggtgg ctggttccca tgaacgtggt tgtcagaggc
1261 gggggacagc agaggctgca gactggccca cttccctcct ccccagggat gccaagcttg
1321 gatcatggcc ctaatcccaa ccccaacccc atgggaggag gaggaggagg aagaagagga
1381 ggaggaggag gaggaggagg aggaggagga ggaggccagg tcctggtgga gcctttgccc
1441 agcccagtcc tctctgcctc ctcctggctg aagctgtttg tcaggattac cctcgggcta
1501 aagaggaaaa ataaagatgt tgagctacca aaaaaaaaaa aaaaaaa
//