LOCUS BC026027 3431 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens transcription factor binding to IGHM enhancer 3, mRNA (cDNA clone MGC:39177 IMAGE:4576858), complete cds. ACCESSION BC026027 VERSION BC026027.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 3431) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 3431) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (20-MAR-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC/DCTD/DTP cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Genome Sequence Centre, BC Cancer Agency, Vancouver, BC, Canada info@bcgsc.bc.ca Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 42 Row: e Column: 5 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 21359903. FEATURES Location/Qualifiers source 1..3431 /db_xref="H-InvDB:HIT000040072" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:39177 IMAGE:4576858" /tissue_type="Skin, melanotic melanoma." /clone_lib="NIH_MGC_20" /lab_host="DH10B-R" /note="Vector: pOTB7" gene 1..3431 /gene="TFE3" /gene_synonym="RCCP2" /db_xref="GeneID:7030" /db_xref="HGNC:HGNC:11752" /db_xref="MIM:314310" CDS 239..1966 /gene="TFE3" /gene_synonym="RCCP2" /codon_start=1 /product="transcription factor binding to IGHM enhancer 3" /protein_id="AAH26027.1" /db_xref="GeneID:7030" /db_xref="HGNC:HGNC:11752" /db_xref="MIM:314310" /translation="MSHAAEPARDGVEASAEGPRAVFVLLEERRPADSAQLLSLNSLL PESGIVADIELENVLDPDSFYELKSQPLPLRSSLPISLQATPATPATLSASSSAGGSR TPAMSSSSSSRVLLRQQLMRAQAQEQERRERREQAAAAPFPSPAPASPAISVVGVSAG GHTLSRPPPAQVPREVLKVQTHLENPTRYHLQQARRQQVKQYLSTTLGPKLASQALTP PPGPASAQPLPAPEAAHTTGPTGSAPNSPMALLTIGSSSEKEIDDVIDEIISLESSYN DEMLSYLPGGTTGLQLPSTLPVSGNLLDVYSSQGVATPAITVSNSCPAELPNIKREIS ETEAKALLKERQKKDNHNLIERRRRFNINDRIKELGTLIPKSSDPEMRWNKGTILKAS VDYIRKLQKEQQRSKDLESRQRSLEQANRSLQLRIQELELQAQIHGLPVPPTPGLLSL ATTSASDSLKPEQLDIEEEGRPGAATFHVGGGPAQNAPHQQPPAPPSDALLDLHFPSD HLGDLGDPFHLGLEDILMEEEEGVVGGLSGGALSPLRAASDPLLSSVSPAVSKASSRR SSFSMEEES" BASE COUNT 754 a 1053 c 974 g 650 t ORIGIN 1 gggggaggag ggcggtcgtc cggggttagg ttgagggggg gcgtcggtcc gttctgggcg 61 ggggatgact cacagcccat cccatctccc cgacgccgcc cgcccgcgca gtgctagctc 121 catggcttag cggaggaggc ggcagtggcg agctgggggg aggggggact cttattttgt 181 tagggggacc gggccgaggc ccgaccggcc tggcagggct cgcccggggc cgggcgtcat 241 gtctcatgcg gccgaaccag ctcgggatgg cgtagaggcc agcgcggagg gccctcgagc 301 cgtgttcgtg ctgttggagg agcgcaggcc ggccgactcg gctcagctgc tcagcctgaa 361 ctctttgctt ccggaatccg ggattgttgc tgacatagaa ttagaaaacg tccttgatcc 421 tgacagcttc tacgagctca aaagccaacc cttacccctt cgctcaagcc tcccaatatc 481 actgcaggcc acaccagcca ccccagctac actctctgca tcgtcttctg cagggggctc 541 caggacccct gccatgtcgt catcttcttc atcgagggtc ttgctgcggc agcagctaat 601 gcgggcccag gcgcaggagc aggagaggcg tgagcgtcgg gaacaggccg ccgcggctcc 661 cttccccagt cctgcacctg cctctcctgc catctctgtg gttggcgtct ctgctggggg 721 ccacacattg agccgtccac cccctgctca ggtgcccagg gaggtgctca aggtgcagac 781 ccatctggag aacccaacgc gctaccacct gcagcaggcg cgccggcagc aggtgaaaca 841 gtacctgtcc accacactcg ggcccaagct ggcttcccag gccctcaccc caccgccggg 901 gcccgcaagt gcccagccac tgcctgcccc tgaggctgcc cacactaccg gccccacagg 961 cagtgcgccc aacagcccca tggcgctgct caccatcggg tccagctcag agaaggagat 1021 tgatgatgtc attgatgaga tcatcagcct ggagtccagt tacaatgatg aaatgctcag 1081 ctatctgccc ggaggcacca caggactgca gctccccagc acgctgcctg tgtcagggaa 1141 tctgcttgat gtgtacagta gtcaaggcgt ggccacacca gccatcactg tcagcaactc 1201 ctgcccagct gagctgccca acatcaaacg ggagatctct gagaccgagg caaaggccct 1261 tttgaaggaa cggcagaaga aagacaatca caacctaatt gagcgtcgca ggcgattcaa 1321 cattaacgac aggatcaagg aactgggcac tctcatccct aagtccagtg acccggagat 1381 gcgctggaac aagggcacca tcctgaaggc ctctgtggat tatatccgca agctgcagaa 1441 ggagcagcag cgctccaaag acctggagag ccggcagcga tccctggagc aggccaaccg 1501 cagcctgcag ctccgaattc aggaactaga actgcaggcc cagatccatg gcctgccagt 1561 gcctcccact ccagggctgc tttccttggc cacgacttcg gcttctgaca gcctcaagcc 1621 agagcagctg gacattgagg aggagggcag gccaggcgca gcaacgttcc atgtaggggg 1681 gggacctgcc cagaatgctc cccatcagca gccccctgca ccgccctcag atgcccttct 1741 ggacctgcac tttcccagcg accacctggg ggacctggga gaccccttcc acctggggct 1801 ggaggacatt ctgatggagg aggaggaggg ggtggtggga ggactgtcgg ggggtgccct 1861 gtccccactg cgggctgcct ccgatcccct gctctcttca gtgtcccctg ctgtctccaa 1921 ggccagcagc cgccgcagca gcttcagcat ggaagaggag tcctgatcag gcctcacccc 1981 tcccctggga ctttcccacc caggaaagga ggaccagtca ggatgaggcc ccgccttttc 2041 ccccaccctc ccatgagact gccctgccca ggtatcctgg gggaagagga gatgtgatca 2101 ggccccaccc ctgtaatcag gcaaggagga ggagtcagat gaggccctgc accttcccca 2161 aaggaaccgc ccagtgcagg tatttcagaa ggagaaggct ggagaaggac atgagatcag 2221 ggcctgcccc ctggggatca cagcctcacc cctgcccctg tgggactcat ccttgcccag 2281 gtgagggaag gagacaggat gaggtctcga ccctgtcccc tagggactgt cctagccagg 2341 tctcctggga aagggagatg tcaggatgtt gctccatcct ttgtcttgga accaccagtc 2401 tagtccgtcc tggcacagaa gaggagtcaa gtaatggagg tcccagccct gggggtttaa 2461 gctctgcccc ttccccatga accctgccct gctctgccca ggcaaggaac agaagtgagg 2521 atgagaccca gccccttccc ctgggaactc tcctggcctt ctaggaatgg aggagccagg 2581 ccccacccct tccctatagg aacagcccag cacaggtatt tcaggtgtga aagaatcagt 2641 aggaccaggc caccgctagt gcttgtggag atcacagccc cacccttgtc cctcagcaac 2701 atcccatcta agcattccac actgcaggga ggagtggtac ttaagctccc ctgccttaac 2761 ctgggaccaa cctgacctaa cctaggaggg ctctgagcca accttgctct tggggaaggg 2821 gacagattat gaaatttcat ggatgaattt tccagaccta tatctggagt gagaggcccc 2881 cacccttggg cagagtcctg ccttcttcct tgaggggcag tttgggaagg tgatgggtat 2941 tagtggggga ctgagttcag gttaccagaa ccagtacctc agtattcttt ttcaacatgt 3001 agggcaagag gatgaaggaa ggggctatcc tgggacctcc ccagcccagg aaaaactgga 3061 agccttcccc cagcaaggca gaagcttgga ggagggttgt aaaagcatat tgtaccccct 3121 catttgttta tctgattttt ttattgctcc gcatactgag aatctaggcc accccaacct 3181 ctgttcccca cccagttctt catttggagg aatcacccca tttcagagtt atcaagagac 3241 actcccccct ccattcccac ccctcatacc tacacccaag gttgtcagct ttggattgct 3301 ggggccaggc cccatggagg gtatactgag gggtctatag gtttgtgatt aaaataataa 3361 aagctaggcg tgtttgatgc gcttttaact ttgaaaaaaa aaaaaaaaaa aaaaaaaaaa 3421 aaaaaaaaaa a //