LOCUS BC026027 3431 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens transcription factor binding to IGHM enhancer 3, mRNA
(cDNA clone MGC:39177 IMAGE:4576858), complete cds.
ACCESSION BC026027
VERSION BC026027.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3431)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3431)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (20-MAR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 42 Row: e Column: 5
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 21359903.
FEATURES Location/Qualifiers
source 1..3431
/db_xref="H-InvDB:HIT000040072"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:39177 IMAGE:4576858"
/tissue_type="Skin, melanotic melanoma."
/clone_lib="NIH_MGC_20"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..3431
/gene="TFE3"
/gene_synonym="RCCP2"
/db_xref="GeneID:7030"
/db_xref="HGNC:HGNC:11752"
/db_xref="MIM:314310"
CDS 239..1966
/gene="TFE3"
/gene_synonym="RCCP2"
/codon_start=1
/product="transcription factor binding to IGHM enhancer 3"
/protein_id="AAH26027.1"
/db_xref="GeneID:7030"
/db_xref="HGNC:HGNC:11752"
/db_xref="MIM:314310"
/translation="MSHAAEPARDGVEASAEGPRAVFVLLEERRPADSAQLLSLNSLL
PESGIVADIELENVLDPDSFYELKSQPLPLRSSLPISLQATPATPATLSASSSAGGSR
TPAMSSSSSSRVLLRQQLMRAQAQEQERRERREQAAAAPFPSPAPASPAISVVGVSAG
GHTLSRPPPAQVPREVLKVQTHLENPTRYHLQQARRQQVKQYLSTTLGPKLASQALTP
PPGPASAQPLPAPEAAHTTGPTGSAPNSPMALLTIGSSSEKEIDDVIDEIISLESSYN
DEMLSYLPGGTTGLQLPSTLPVSGNLLDVYSSQGVATPAITVSNSCPAELPNIKREIS
ETEAKALLKERQKKDNHNLIERRRRFNINDRIKELGTLIPKSSDPEMRWNKGTILKAS
VDYIRKLQKEQQRSKDLESRQRSLEQANRSLQLRIQELELQAQIHGLPVPPTPGLLSL
ATTSASDSLKPEQLDIEEEGRPGAATFHVGGGPAQNAPHQQPPAPPSDALLDLHFPSD
HLGDLGDPFHLGLEDILMEEEEGVVGGLSGGALSPLRAASDPLLSSVSPAVSKASSRR
SSFSMEEES"
BASE COUNT 754 a 1053 c 974 g 650 t
ORIGIN
1 gggggaggag ggcggtcgtc cggggttagg ttgagggggg gcgtcggtcc gttctgggcg
61 ggggatgact cacagcccat cccatctccc cgacgccgcc cgcccgcgca gtgctagctc
121 catggcttag cggaggaggc ggcagtggcg agctgggggg aggggggact cttattttgt
181 tagggggacc gggccgaggc ccgaccggcc tggcagggct cgcccggggc cgggcgtcat
241 gtctcatgcg gccgaaccag ctcgggatgg cgtagaggcc agcgcggagg gccctcgagc
301 cgtgttcgtg ctgttggagg agcgcaggcc ggccgactcg gctcagctgc tcagcctgaa
361 ctctttgctt ccggaatccg ggattgttgc tgacatagaa ttagaaaacg tccttgatcc
421 tgacagcttc tacgagctca aaagccaacc cttacccctt cgctcaagcc tcccaatatc
481 actgcaggcc acaccagcca ccccagctac actctctgca tcgtcttctg cagggggctc
541 caggacccct gccatgtcgt catcttcttc atcgagggtc ttgctgcggc agcagctaat
601 gcgggcccag gcgcaggagc aggagaggcg tgagcgtcgg gaacaggccg ccgcggctcc
661 cttccccagt cctgcacctg cctctcctgc catctctgtg gttggcgtct ctgctggggg
721 ccacacattg agccgtccac cccctgctca ggtgcccagg gaggtgctca aggtgcagac
781 ccatctggag aacccaacgc gctaccacct gcagcaggcg cgccggcagc aggtgaaaca
841 gtacctgtcc accacactcg ggcccaagct ggcttcccag gccctcaccc caccgccggg
901 gcccgcaagt gcccagccac tgcctgcccc tgaggctgcc cacactaccg gccccacagg
961 cagtgcgccc aacagcccca tggcgctgct caccatcggg tccagctcag agaaggagat
1021 tgatgatgtc attgatgaga tcatcagcct ggagtccagt tacaatgatg aaatgctcag
1081 ctatctgccc ggaggcacca caggactgca gctccccagc acgctgcctg tgtcagggaa
1141 tctgcttgat gtgtacagta gtcaaggcgt ggccacacca gccatcactg tcagcaactc
1201 ctgcccagct gagctgccca acatcaaacg ggagatctct gagaccgagg caaaggccct
1261 tttgaaggaa cggcagaaga aagacaatca caacctaatt gagcgtcgca ggcgattcaa
1321 cattaacgac aggatcaagg aactgggcac tctcatccct aagtccagtg acccggagat
1381 gcgctggaac aagggcacca tcctgaaggc ctctgtggat tatatccgca agctgcagaa
1441 ggagcagcag cgctccaaag acctggagag ccggcagcga tccctggagc aggccaaccg
1501 cagcctgcag ctccgaattc aggaactaga actgcaggcc cagatccatg gcctgccagt
1561 gcctcccact ccagggctgc tttccttggc cacgacttcg gcttctgaca gcctcaagcc
1621 agagcagctg gacattgagg aggagggcag gccaggcgca gcaacgttcc atgtaggggg
1681 gggacctgcc cagaatgctc cccatcagca gccccctgca ccgccctcag atgcccttct
1741 ggacctgcac tttcccagcg accacctggg ggacctggga gaccccttcc acctggggct
1801 ggaggacatt ctgatggagg aggaggaggg ggtggtggga ggactgtcgg ggggtgccct
1861 gtccccactg cgggctgcct ccgatcccct gctctcttca gtgtcccctg ctgtctccaa
1921 ggccagcagc cgccgcagca gcttcagcat ggaagaggag tcctgatcag gcctcacccc
1981 tcccctggga ctttcccacc caggaaagga ggaccagtca ggatgaggcc ccgccttttc
2041 ccccaccctc ccatgagact gccctgccca ggtatcctgg gggaagagga gatgtgatca
2101 ggccccaccc ctgtaatcag gcaaggagga ggagtcagat gaggccctgc accttcccca
2161 aaggaaccgc ccagtgcagg tatttcagaa ggagaaggct ggagaaggac atgagatcag
2221 ggcctgcccc ctggggatca cagcctcacc cctgcccctg tgggactcat ccttgcccag
2281 gtgagggaag gagacaggat gaggtctcga ccctgtcccc tagggactgt cctagccagg
2341 tctcctggga aagggagatg tcaggatgtt gctccatcct ttgtcttgga accaccagtc
2401 tagtccgtcc tggcacagaa gaggagtcaa gtaatggagg tcccagccct gggggtttaa
2461 gctctgcccc ttccccatga accctgccct gctctgccca ggcaaggaac agaagtgagg
2521 atgagaccca gccccttccc ctgggaactc tcctggcctt ctaggaatgg aggagccagg
2581 ccccacccct tccctatagg aacagcccag cacaggtatt tcaggtgtga aagaatcagt
2641 aggaccaggc caccgctagt gcttgtggag atcacagccc cacccttgtc cctcagcaac
2701 atcccatcta agcattccac actgcaggga ggagtggtac ttaagctccc ctgccttaac
2761 ctgggaccaa cctgacctaa cctaggaggg ctctgagcca accttgctct tggggaaggg
2821 gacagattat gaaatttcat ggatgaattt tccagaccta tatctggagt gagaggcccc
2881 cacccttggg cagagtcctg ccttcttcct tgaggggcag tttgggaagg tgatgggtat
2941 tagtggggga ctgagttcag gttaccagaa ccagtacctc agtattcttt ttcaacatgt
3001 agggcaagag gatgaaggaa ggggctatcc tgggacctcc ccagcccagg aaaaactgga
3061 agccttcccc cagcaaggca gaagcttgga ggagggttgt aaaagcatat tgtaccccct
3121 catttgttta tctgattttt ttattgctcc gcatactgag aatctaggcc accccaacct
3181 ctgttcccca cccagttctt catttggagg aatcacccca tttcagagtt atcaagagac
3241 actcccccct ccattcccac ccctcatacc tacacccaag gttgtcagct ttggattgct
3301 ggggccaggc cccatggagg gtatactgag gggtctatag gtttgtgatt aaaataataa
3361 aagctaggcg tgtttgatgc gcttttaact ttgaaaaaaa aaaaaaaaaa aaaaaaaaaa
3421 aaaaaaaaaa a
//