LOCUS BC025279 1686 bp mRNA linear HUM 06-OCT-2003 DEFINITION Homo sapiens scaffold attachment factor B2, mRNA (cDNA clone MGC:39189 IMAGE:5258272), complete cds. ACCESSION BC025279 VERSION BC025279.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1686) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1686) AUTHORS Strausberg,R. TITLE Direct Submission JOURNAL Submitted (05-MAR-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Cancer Genomics Office, National Cancer Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Genome Sequence Centre, BC Cancer Agency, Vancouver, BC, Canada info@bcgsc.bc.ca Steven Jones, Jennifer Asano, Ian Bosdet, Yaron Butterfield, Susanna Chan, Readman Chiu, Chris Fjell, Erin Garland, Ran Guin, Letticia Hsiao, Martin Krzywinski, Reta Kutsche, Oliver Lee, Soo Sen Lee, Victor Ling, Carrie Mathewson, Candice McLeavy, Steven Ness, Pawan Pandoh, Anna-Liisa Prabhu, Parvaneh Saeedi, Jacqueline Schein, Duane Smailus, Michael Smith, Lorraine Spence, Jeff Stott, Michael Thorne, Miranada Tsai, Natasja van den Bosch, Jill Vardy, George Yang, Scott Zuyderduyn, Marco Marra. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 42 Row: n Column: 13 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 7661935. FEATURES Location/Qualifiers source 1..1686 /db_xref="H-InvDB:HIT000039879" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:39189 IMAGE:5258272" /tissue_type="Pancreas, epithelioid carcinoma" /clone_lib="NIH_MGC_42" /lab_host="DH10B-R" /note="Vector: pOTB7" gene 1..1686 /gene="SAFB2" /gene_synonym="KIAA0138" /db_xref="GeneID:9667" /db_xref="MIM:608066" CDS 59..1645 /gene="SAFB2" /gene_synonym="KIAA0138" /codon_start=1 /product="SAFB2 protein" /protein_id="AAH25279.1" /db_xref="GeneID:9667" /db_xref="MIM:608066" /translation="MAETLPGSGDSGPGTASLGPGVAETGTRRLSELRVIDLRAELKK RNLDTGGNKSVLMERLKKAVKEEGQDPDEIGIELEATSKKSAKRCVKGLKMEEEGTED NGLEDDSRDGQEDMEASLENLQNMGMMDMSVLDETEVANSSAPDFGEDGTDGLLDSFC DSKEYVAAQLRQLPAQPPEHAVDGEGFKNTLETSSLNFKVTPDIEESLLEPENEKILD ILGETCKSEPVKEESSELEQPFAQDTSSVGPDRKLAEEEDLFDSAHPEEGDLDLASES TAHAQSSKADSLLAVVKREPAEQPGDGERTDCEPVGLEPAVEQSSAASELAEASSEEL AEAPTEAPSPEARDSKEDGRKFDFDACNEVPPAPKESSTSEGADQKMSSFKEEKDIKP IIKDEKGRVGSGSGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCY GFVTMSTSDEATKCISHLHRTELHGRMISVEKAKNEPAGKKLSDRKECEVKKEKLSSV DRHHSVEIKIEKTVIKKEEM" misc_feature 146..250 /gene="SAFB2" /gene_synonym="KIAA0138" /note="SAP; Region: SAP domain. The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins" /db_xref="CDD:pfam02037" misc_feature 1280..1501 /gene="SAFB2" /gene_synonym="KIAA0138" /note="RRM; Region: RNA recognition motif" /db_xref="CDD:smart00360" BASE COUNT 515 a 357 c 527 g 287 t ORIGIN 1 gccgctatag ctgccggcgg tgtgcgactg agtcggtggc gaagacggga acgcgacgat 61 ggcggagact ctgcccgggt cgggcgactc gggccctggc acggcttctc tcggcccggg 121 cgttgcggag actgggacga ggcggctcag cgagctgcgg gtgatcgatc tgcgggcgga 181 gctgaagaag cggaacctgg acacgggcgg caacaagagc gtcctgatgg agcggctcaa 241 gaaggcggtt aaagaagagg ggcaagatcc tgatgaaatt ggcatcgagt tagaagccac 301 cagcaagaag tcagccaaga gatgtgttaa aggactgaag atggaggagg aaggcacaga 361 agataatggc ctggaagacg attccagaga cgggcaggag gacatggaag caagtctgga 421 gaacctgcag aatatgggca tgatggacat gagtgtgcta gacgaaactg aagtggcgaa 481 tagcagtgct ccagattttg gggaggatgg cacggacggc cttctcgatt ccttttgtga 541 tagtaaagaa tacgtggctg cacagctgag acagctcccg gctcagcccc cagagcatgc 601 tgtggatggg gaaggattta agaacacttt ggaaacttca tcgttgaact tcaaagtaac 661 tccggacatt gaagaatccc ttttggagcc agaaaatgag aaaatactcg acattttggg 721 ggaaacttgt aaatctgagc cagtaaaaga agaaagttcc gagctggagc agccatttgc 781 acaggacaca agtagcgtgg ggccagacag aaagcttgcg gaggaagagg acctatttga 841 cagcgcccat ccggaagagg gtgatttaga tttggccagc gagtcaacag cacacgctca 901 gtcgagcaag gcagacagcc tgttagcggt agtgaaaagg gagcccgcgg agcagccagg 961 cgatggcgag aggacggact gtgagcctgt agggctagag ccggcagttg agcagagtag 1021 tgcggcctcc gagctcgcgg aggcctctag cgaggagctc gcagaagcac ccacggaagc 1081 cccaagccca gaagccagag atagcaaaga agacgggagg aagtttgatt ttgacgcttg 1141 taatgaagtc cctccggctc ctaaagagtc ctcaaccagt gagggcgctg atcagaaaat 1201 gagctctttt aaggaagaaa aagatataaa gccaatcatt aaagatgaaa aaggtcgggt 1261 cggcagcggt tctggtcgga acctgtgggt cagcgggctg tcctccacaa cacgcgctac 1321 ggatctcaag aaccttttca gcaagtatgg gaaggttgtc ggggccaaag tggtaacgaa 1381 cgcccgcagc ccgggggctc gatgctatgg attcgtcacc atgtcgacat ctgacgaggc 1441 gaccaagtgc atcagccatc tccacagaac tgagctgcat ggacgaatga tctccgtaga 1501 gaaggccaaa aatgagcctg ctgggaaaaa gctttccgac agaaaagagt gcgaagtgaa 1561 gaaggaaaaa ttatcgagtg tcgacagaca tcattctgtg gagatcaaaa ttgaaaaaac 1621 tgtaattaag aaggaagaaa tgtaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa 1681 aaaaaa //