LOCUS BC025279 1686 bp mRNA linear HUM 06-OCT-2003
DEFINITION Homo sapiens scaffold attachment factor B2, mRNA (cDNA clone
MGC:39189 IMAGE:5258272), complete cds.
ACCESSION BC025279
VERSION BC025279.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1686)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1686)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (05-MAR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Steven Jones, Jennifer Asano, Ian Bosdet, Yaron Butterfield,
Susanna Chan, Readman Chiu, Chris Fjell, Erin Garland, Ran Guin,
Letticia Hsiao, Martin Krzywinski, Reta Kutsche, Oliver Lee, Soo
Sen Lee, Victor Ling, Carrie Mathewson, Candice McLeavy, Steven
Ness, Pawan Pandoh, Anna-Liisa Prabhu, Parvaneh Saeedi, Jacqueline
Schein, Duane Smailus, Michael Smith, Lorraine Spence, Jeff Stott,
Michael Thorne, Miranada Tsai, Natasja van den Bosch, Jill Vardy,
George Yang, Scott Zuyderduyn, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 42 Row: n Column: 13
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 7661935.
FEATURES Location/Qualifiers
source 1..1686
/db_xref="H-InvDB:HIT000039879"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:39189 IMAGE:5258272"
/tissue_type="Pancreas, epithelioid carcinoma"
/clone_lib="NIH_MGC_42"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1686
/gene="SAFB2"
/gene_synonym="KIAA0138"
/db_xref="GeneID:9667"
/db_xref="MIM:608066"
CDS 59..1645
/gene="SAFB2"
/gene_synonym="KIAA0138"
/codon_start=1
/product="SAFB2 protein"
/protein_id="AAH25279.1"
/db_xref="GeneID:9667"
/db_xref="MIM:608066"
/translation="MAETLPGSGDSGPGTASLGPGVAETGTRRLSELRVIDLRAELKK
RNLDTGGNKSVLMERLKKAVKEEGQDPDEIGIELEATSKKSAKRCVKGLKMEEEGTED
NGLEDDSRDGQEDMEASLENLQNMGMMDMSVLDETEVANSSAPDFGEDGTDGLLDSFC
DSKEYVAAQLRQLPAQPPEHAVDGEGFKNTLETSSLNFKVTPDIEESLLEPENEKILD
ILGETCKSEPVKEESSELEQPFAQDTSSVGPDRKLAEEEDLFDSAHPEEGDLDLASES
TAHAQSSKADSLLAVVKREPAEQPGDGERTDCEPVGLEPAVEQSSAASELAEASSEEL
AEAPTEAPSPEARDSKEDGRKFDFDACNEVPPAPKESSTSEGADQKMSSFKEEKDIKP
IIKDEKGRVGSGSGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCY
GFVTMSTSDEATKCISHLHRTELHGRMISVEKAKNEPAGKKLSDRKECEVKKEKLSSV
DRHHSVEIKIEKTVIKKEEM"
misc_feature 146..250
/gene="SAFB2"
/gene_synonym="KIAA0138"
/note="SAP; Region: SAP domain. The SAP (after SAF-A/B,
Acinus and PIAS) motif is a putative DNA binding domain
found in diverse nuclear proteins"
/db_xref="CDD:pfam02037"
misc_feature 1280..1501
/gene="SAFB2"
/gene_synonym="KIAA0138"
/note="RRM; Region: RNA recognition motif"
/db_xref="CDD:smart00360"
BASE COUNT 515 a 357 c 527 g 287 t
ORIGIN
1 gccgctatag ctgccggcgg tgtgcgactg agtcggtggc gaagacggga acgcgacgat
61 ggcggagact ctgcccgggt cgggcgactc gggccctggc acggcttctc tcggcccggg
121 cgttgcggag actgggacga ggcggctcag cgagctgcgg gtgatcgatc tgcgggcgga
181 gctgaagaag cggaacctgg acacgggcgg caacaagagc gtcctgatgg agcggctcaa
241 gaaggcggtt aaagaagagg ggcaagatcc tgatgaaatt ggcatcgagt tagaagccac
301 cagcaagaag tcagccaaga gatgtgttaa aggactgaag atggaggagg aaggcacaga
361 agataatggc ctggaagacg attccagaga cgggcaggag gacatggaag caagtctgga
421 gaacctgcag aatatgggca tgatggacat gagtgtgcta gacgaaactg aagtggcgaa
481 tagcagtgct ccagattttg gggaggatgg cacggacggc cttctcgatt ccttttgtga
541 tagtaaagaa tacgtggctg cacagctgag acagctcccg gctcagcccc cagagcatgc
601 tgtggatggg gaaggattta agaacacttt ggaaacttca tcgttgaact tcaaagtaac
661 tccggacatt gaagaatccc ttttggagcc agaaaatgag aaaatactcg acattttggg
721 ggaaacttgt aaatctgagc cagtaaaaga agaaagttcc gagctggagc agccatttgc
781 acaggacaca agtagcgtgg ggccagacag aaagcttgcg gaggaagagg acctatttga
841 cagcgcccat ccggaagagg gtgatttaga tttggccagc gagtcaacag cacacgctca
901 gtcgagcaag gcagacagcc tgttagcggt agtgaaaagg gagcccgcgg agcagccagg
961 cgatggcgag aggacggact gtgagcctgt agggctagag ccggcagttg agcagagtag
1021 tgcggcctcc gagctcgcgg aggcctctag cgaggagctc gcagaagcac ccacggaagc
1081 cccaagccca gaagccagag atagcaaaga agacgggagg aagtttgatt ttgacgcttg
1141 taatgaagtc cctccggctc ctaaagagtc ctcaaccagt gagggcgctg atcagaaaat
1201 gagctctttt aaggaagaaa aagatataaa gccaatcatt aaagatgaaa aaggtcgggt
1261 cggcagcggt tctggtcgga acctgtgggt cagcgggctg tcctccacaa cacgcgctac
1321 ggatctcaag aaccttttca gcaagtatgg gaaggttgtc ggggccaaag tggtaacgaa
1381 cgcccgcagc ccgggggctc gatgctatgg attcgtcacc atgtcgacat ctgacgaggc
1441 gaccaagtgc atcagccatc tccacagaac tgagctgcat ggacgaatga tctccgtaga
1501 gaaggccaaa aatgagcctg ctgggaaaaa gctttccgac agaaaagagt gcgaagtgaa
1561 gaaggaaaaa ttatcgagtg tcgacagaca tcattctgtg gagatcaaaa ttgaaaaaac
1621 tgtaattaag aaggaagaaa tgtaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
1681 aaaaaa
//