LOCUS BC024272 1155 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens CD74 molecule, major histocompatibility complex, class II invariant chain, mRNA (cDNA clone MGC:39144 IMAGE:4763768), complete cds. ACCESSION BC024272 VERSION BC024272.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1155) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1155) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (26-FEB-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Louis Staudt cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Genome Sequence Centre, BC Cancer Agency, Vancouver, BC, Canada info@bcgsc.bc.ca Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 42 Row: g Column: 4 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 68448543. FEATURES Location/Qualifiers source 1..1155 /db_xref="H-InvDB:HIT000039801" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:39144 IMAGE:4763768" /tissue_type="Primary B-Cells from Tonsils" /clone_lib="NIH_MGC_48" /lab_host="DH10B-R" /note="Vector: pOTB7" gene 1..1155 /gene="CD74" /gene_synonym="HLADG" /gene_synonym="Ia-GAMMA" /gene_synonym="protein 41" /db_xref="GeneID:972" /db_xref="HGNC:HGNC:1697" /db_xref="MIM:142790" CDS 21..503 /gene="CD74" /gene_synonym="HLADG" /gene_synonym="Ia-GAMMA" /gene_synonym="protein 41" /codon_start=1 /product="CD74 molecule, major histocompatibility complex, class II invariant chain" /protein_id="AAH24272.1" /db_xref="GeneID:972" /db_xref="HGNC:HGNC:1697" /db_xref="MIM:142790" /translation="MHRRRSRSCREDQKPVMDDQRDLISNNEQLPMLGRRPGAPESKC SRGALYTGFSILVTLLLAGQATTAYFLYQQQGRLDKLTVTSQNLQLENLRMKLPKPPK PVSKMRMATPLLMQALPMGALPQGPMQNATKYGNMTEDHVMHLLQSHWNWRTRLLGWV " BASE COUNT 277 a 383 c 284 g 211 t ORIGIN 1 ccggggggtc agggtcccag atgcacagga ggagaagcag gagctgtcgg gaagatcaga 61 agccagtcat ggatgaccag cgcgacctta tctccaacaa tgagcaactg cccatgctgg 121 gccggcgccc tggggccccg gagagcaagt gcagccgcgg agccctgtac acaggctttt 181 ccatcctggt gactctgctc ctcgctggcc aggccaccac cgcctacttc ctgtaccagc 241 agcagggccg gctggacaaa ctgacagtca cctcccagaa cctgcagctg gagaacctgc 301 gcatgaagct tcccaagcct cccaagcctg tgagcaagat gcgcatggcc accccgctgc 361 tgatgcaggc gctgcccatg ggagccctgc cccaggggcc catgcagaat gccaccaagt 421 atggcaacat gacagaggac catgtgatgc acctgctcca gagtcactgg aactggagga 481 cccgtcttct gggctgggtg tgaccaagca ggatctgggc ccagtcccca tgtgagagca 541 gcagaggcgg tcttcaacat cctgccagcc ccacacagct acagctttct tgctcccttc 601 agcccccagc ccctccccca tctcccaccc tgtacctcat cccatgagac cctggtgcct 661 ggctctttcg tcacccttgg acaagacaaa ccaagtcgga acagcagata acaatgcagc 721 aaggccctgc tgcccaatct ccatctgtca acaggggcgt gaggtcccag gaagtggcca 781 aaagctagac agatccccgt tcctgacatc acagcagcct ccaacacaag gctccaagac 841 ctaggctcat ggacgagatg ggaaggcaca gggagaaggg ataaccctac acccagaccc 901 caggctggac atgctgactg tcctctcccc tccagccttt ggccttggct tttctagcct 961 atttacctgc aggctgagcc actctcttcc ctttccccag catcactccc caaggaagag 1021 ccaatgtttt ccacccataa tcctttctgc cgacccctag ttccctctgc tcagccaagc 1081 ttgttatcag ctttcagggc catggttcac attagaataa aaggtagtaa ttagaacaaa 1141 aaaaaaaaaa aaaaa //