LOCUS BC024272 1155 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens CD74 molecule, major histocompatibility complex, class
II invariant chain, mRNA (cDNA clone MGC:39144 IMAGE:4763768),
complete cds.
ACCESSION BC024272
VERSION BC024272.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1155)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1155)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (26-FEB-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Louis Staudt
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 42 Row: g Column: 4
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 68448543.
FEATURES Location/Qualifiers
source 1..1155
/db_xref="H-InvDB:HIT000039801"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:39144 IMAGE:4763768"
/tissue_type="Primary B-Cells from Tonsils"
/clone_lib="NIH_MGC_48"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1155
/gene="CD74"
/gene_synonym="HLADG"
/gene_synonym="Ia-GAMMA"
/gene_synonym="protein 41"
/db_xref="GeneID:972"
/db_xref="HGNC:HGNC:1697"
/db_xref="MIM:142790"
CDS 21..503
/gene="CD74"
/gene_synonym="HLADG"
/gene_synonym="Ia-GAMMA"
/gene_synonym="protein 41"
/codon_start=1
/product="CD74 molecule, major histocompatibility complex,
class II invariant chain"
/protein_id="AAH24272.1"
/db_xref="GeneID:972"
/db_xref="HGNC:HGNC:1697"
/db_xref="MIM:142790"
/translation="MHRRRSRSCREDQKPVMDDQRDLISNNEQLPMLGRRPGAPESKC
SRGALYTGFSILVTLLLAGQATTAYFLYQQQGRLDKLTVTSQNLQLENLRMKLPKPPK
PVSKMRMATPLLMQALPMGALPQGPMQNATKYGNMTEDHVMHLLQSHWNWRTRLLGWV
"
BASE COUNT 277 a 383 c 284 g 211 t
ORIGIN
1 ccggggggtc agggtcccag atgcacagga ggagaagcag gagctgtcgg gaagatcaga
61 agccagtcat ggatgaccag cgcgacctta tctccaacaa tgagcaactg cccatgctgg
121 gccggcgccc tggggccccg gagagcaagt gcagccgcgg agccctgtac acaggctttt
181 ccatcctggt gactctgctc ctcgctggcc aggccaccac cgcctacttc ctgtaccagc
241 agcagggccg gctggacaaa ctgacagtca cctcccagaa cctgcagctg gagaacctgc
301 gcatgaagct tcccaagcct cccaagcctg tgagcaagat gcgcatggcc accccgctgc
361 tgatgcaggc gctgcccatg ggagccctgc cccaggggcc catgcagaat gccaccaagt
421 atggcaacat gacagaggac catgtgatgc acctgctcca gagtcactgg aactggagga
481 cccgtcttct gggctgggtg tgaccaagca ggatctgggc ccagtcccca tgtgagagca
541 gcagaggcgg tcttcaacat cctgccagcc ccacacagct acagctttct tgctcccttc
601 agcccccagc ccctccccca tctcccaccc tgtacctcat cccatgagac cctggtgcct
661 ggctctttcg tcacccttgg acaagacaaa ccaagtcgga acagcagata acaatgcagc
721 aaggccctgc tgcccaatct ccatctgtca acaggggcgt gaggtcccag gaagtggcca
781 aaagctagac agatccccgt tcctgacatc acagcagcct ccaacacaag gctccaagac
841 ctaggctcat ggacgagatg ggaaggcaca gggagaaggg ataaccctac acccagaccc
901 caggctggac atgctgactg tcctctcccc tccagccttt ggccttggct tttctagcct
961 atttacctgc aggctgagcc actctcttcc ctttccccag catcactccc caaggaagag
1021 ccaatgtttt ccacccataa tcctttctgc cgacccctag ttccctctgc tcagccaagc
1081 ttgttatcag ctttcagggc catggttcac attagaataa aaggtagtaa ttagaacaaa
1141 aaaaaaaaaa aaaaa
//