LOCUS BC024145 2394 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens TNF receptor-associated factor 1, mRNA (cDNA clone MGC:10353 IMAGE:3832475), complete cds. ACCESSION BC024145 VERSION BC024145.2 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2394) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2394) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (19-FEB-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT On Aug 19, 2003 this sequence version replaced BC024145.1. Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC/DCTD/DTP cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Institute for Systems Biology http://www.systemsbiology.org contact: amadan@systemsbiology.org Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 14 Row: p Column: 11. FEATURES Location/Qualifiers source 1..2394 /db_xref="H-InvDB:HIT000039737" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:10353 IMAGE:3832475" /tissue_type="Skin, melanotic melanoma." /clone_lib="NIH_MGC_20" /lab_host="DH10B-R" /note="Vector: pOTB7" gene 1..2394 /gene="TRAF1" /gene_synonym="EBI6" /gene_synonym="MGC:10353" /db_xref="GeneID:7185" /db_xref="HGNC:HGNC:12031" /db_xref="MIM:601711" CDS 79..1329 /gene="TRAF1" /gene_synonym="EBI6" /gene_synonym="MGC:10353" /codon_start=1 /product="TNF receptor-associated factor 1" /protein_id="AAH24145.1" /db_xref="GeneID:7185" /db_xref="HGNC:HGNC:12031" /db_xref="MIM:601711" /translation="MASSSGSSPRPAPDENEFPFGCPPTVCQDPKEPRALCCAGCLSE NPRNGEDQICPKCRGEDLQSISPGSRLRTQEKAHPEVAEAGIGCPFAGVGCSFKGSPQ SVQEHEVTSQTSHLNLLLGFMKQWKARLGCGLESGPMALEQNLSDLQLQAAVEVAGDL EVDCYRAPCSESQEELALQHFMKEKLLAELEGKLRVFENIVAVLNKEVEASHLALATS IHQSQLDRERILSLEQRVVELQQTLAQKDQALGKLEQSLRLMEEASFDGTFLWKITNV TRRCHESACGRTVSLFSPAFYTAKYGYKLCLRLYLNGDGTGKRTHLSLFIVIMRGEYD ALLPWPFRNKVTFMLLDQNNREHAIDAFRPDLSSASFQRPQSETNVASGCPLFFPLSK LQSPKHAYVKDDTMFLKCIVETST" BASE COUNT 552 a 708 c 685 g 449 t ORIGIN 1 caggccagga ctccacaagg ctggtcccct gccctggagc aacttaaaca ggccctctgg 61 ccagcctgga accctgagat ggcctccagc tcaggcagca gtcctcgccc ggcccctgat 121 gagaatgagt ttccctttgg gtgccctccc accgtctgcc aggacccaaa ggagcccagg 181 gctctctgct gtgcaggctg tctctctgag aacccgagga atggcgagga tcagatctgc 241 cccaaatgca gaggggaaga cctccagtct ataagcccag gaagccgtct tcgaactcag 301 gagaaggctc accccgaggt ggctgaggct ggaattgggt gcccctttgc aggtgtcggc 361 tgctccttca agggaagccc acagtctgtg caagagcatg aggtcacctc ccagacctcc 421 cacctaaacc tgctgttggg gttcatgaaa cagtggaagg cccggctggg ctgtggcctg 481 gagtctgggc ccatggccct ggagcagaac ctgtcagacc tgcagctgca ggcagccgtg 541 gaagtggcgg gggacctgga ggtcgattgc taccgggcac cctgctccga gagccaggag 601 gagctggccc tgcagcactt catgaaggag aagcttctgg ctgagctgga ggggaagctg 661 cgtgtgtttg agaacattgt tgctgtcctc aacaaggagg tggaggcctc ccacctggcc 721 ctggccacct ctatccacca gagccagctg gaccgtgagc gcatcctgag cttggagcag 781 agggtggtgg agcttcagca gaccctggcc cagaaagacc aggccctggg caagctggag 841 cagagcttgc gcctcatgga ggaggcctcc ttcgatggca ctttcctgtg gaagatcacc 901 aatgtcacca ggcggtgcca tgagtcggcc tgtggcagga ccgtcagcct cttctcccca 961 gccttctaca ctgccaagta tggctacaag ttgtgcctgc ggctgtacct gaatggagat 1021 ggcactggaa agagaaccca tctgtcgctc ttcatcgtga tcatgagagg ggagtatgat 1081 gcgctgctgc cgtggccttt ccggaacaag gtcaccttca tgctgctgga ccagaacaac 1141 cgtgagcacg ccattgacgc cttccggcct gacctaagct cagcgtcctt ccagaggccc 1201 cagagtgaaa ccaacgtggc cagtggatgc ccactcttct tccccctcag caaactgcag 1261 tcacccaagc acgcctacgt gaaggacgac acaatgttcc tcaagtgcat tgtggagacc 1321 agcacttagg gtgggcgggg ctcctgaggg agctccaact cagaagggag ctagccagag 1381 gactgtgatg ccctgccctt ggcacccaag acctcagggc acaaagatgg gtgaaggctg 1441 gcatgatcca agcaagactg aggggtcgac ttcgggctgg ccatctggtt aggatggcag 1501 gacgtgggct gggcccacaa aggcaaaggg tccagaagga gacaggcaga gctgctcccc 1561 tctgcacgga ccatgcgaca ctgggaggcc agtgagccac tccggccccg aatgttgagg 1621 tggactctca ccaaatgaga agaaaatgga accaggcttg gaaccgtagg acccaagcag 1681 agaagctctc gggctaggaa gatctctgca gggccgccag ggagacctgg acacaggcct 1741 gctctctttt tctccagggt cagaaacagg accgggtgga agggatgggg tgccagtttg 1801 aatgcagtct gtccaggctc gtcattggag gtgaacaagc aaacccagag ggctccacta 1861 ggacttcaaa ttgggggttg gatttgaaga cttttaagtt tccttccagc ccagaaagtc 1921 tctcattcta ggcctcctgg cccaggtgag tcctagagct acaggggttc tggaaacatt 1981 caggagcttc ctgtcctccc agctcctcac tcaccttcag taacccccac tggactgacc 2041 tggtccacag ggcacctgcc accctgggcc tggcagctca gcttccccaa cacgcaggag 2101 cacacccagc ccccacatcc tgtgcctcca tcagctaaac accacgtcac ttcatgcagg 2161 tgaaacccag tcactgtgag ctcccaggtg cagccagagg cacctcaaga agaagagggg 2221 cataaacttt cctcttcctg cctagaggcc ccacctttgg tgctttccag aatcccgtaa 2281 cacctgatta actgaggcat ccacttcttt cagcagactg atcaggacct ccaagccact 2341 gagcaatgta taaccccaaa gaaataattt ttagaaaaaa aaaaaaaaaa aaaa //