LOCUS BC024145 2394 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens TNF receptor-associated factor 1, mRNA (cDNA clone
MGC:10353 IMAGE:3832475), complete cds.
ACCESSION BC024145
VERSION BC024145.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2394)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2394)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (19-FEB-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC024145.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 14 Row: p Column: 11.
FEATURES Location/Qualifiers
source 1..2394
/db_xref="H-InvDB:HIT000039737"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:10353 IMAGE:3832475"
/tissue_type="Skin, melanotic melanoma."
/clone_lib="NIH_MGC_20"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2394
/gene="TRAF1"
/gene_synonym="EBI6"
/gene_synonym="MGC:10353"
/db_xref="GeneID:7185"
/db_xref="HGNC:HGNC:12031"
/db_xref="MIM:601711"
CDS 79..1329
/gene="TRAF1"
/gene_synonym="EBI6"
/gene_synonym="MGC:10353"
/codon_start=1
/product="TNF receptor-associated factor 1"
/protein_id="AAH24145.1"
/db_xref="GeneID:7185"
/db_xref="HGNC:HGNC:12031"
/db_xref="MIM:601711"
/translation="MASSSGSSPRPAPDENEFPFGCPPTVCQDPKEPRALCCAGCLSE
NPRNGEDQICPKCRGEDLQSISPGSRLRTQEKAHPEVAEAGIGCPFAGVGCSFKGSPQ
SVQEHEVTSQTSHLNLLLGFMKQWKARLGCGLESGPMALEQNLSDLQLQAAVEVAGDL
EVDCYRAPCSESQEELALQHFMKEKLLAELEGKLRVFENIVAVLNKEVEASHLALATS
IHQSQLDRERILSLEQRVVELQQTLAQKDQALGKLEQSLRLMEEASFDGTFLWKITNV
TRRCHESACGRTVSLFSPAFYTAKYGYKLCLRLYLNGDGTGKRTHLSLFIVIMRGEYD
ALLPWPFRNKVTFMLLDQNNREHAIDAFRPDLSSASFQRPQSETNVASGCPLFFPLSK
LQSPKHAYVKDDTMFLKCIVETST"
BASE COUNT 552 a 708 c 685 g 449 t
ORIGIN
1 caggccagga ctccacaagg ctggtcccct gccctggagc aacttaaaca ggccctctgg
61 ccagcctgga accctgagat ggcctccagc tcaggcagca gtcctcgccc ggcccctgat
121 gagaatgagt ttccctttgg gtgccctccc accgtctgcc aggacccaaa ggagcccagg
181 gctctctgct gtgcaggctg tctctctgag aacccgagga atggcgagga tcagatctgc
241 cccaaatgca gaggggaaga cctccagtct ataagcccag gaagccgtct tcgaactcag
301 gagaaggctc accccgaggt ggctgaggct ggaattgggt gcccctttgc aggtgtcggc
361 tgctccttca agggaagccc acagtctgtg caagagcatg aggtcacctc ccagacctcc
421 cacctaaacc tgctgttggg gttcatgaaa cagtggaagg cccggctggg ctgtggcctg
481 gagtctgggc ccatggccct ggagcagaac ctgtcagacc tgcagctgca ggcagccgtg
541 gaagtggcgg gggacctgga ggtcgattgc taccgggcac cctgctccga gagccaggag
601 gagctggccc tgcagcactt catgaaggag aagcttctgg ctgagctgga ggggaagctg
661 cgtgtgtttg agaacattgt tgctgtcctc aacaaggagg tggaggcctc ccacctggcc
721 ctggccacct ctatccacca gagccagctg gaccgtgagc gcatcctgag cttggagcag
781 agggtggtgg agcttcagca gaccctggcc cagaaagacc aggccctggg caagctggag
841 cagagcttgc gcctcatgga ggaggcctcc ttcgatggca ctttcctgtg gaagatcacc
901 aatgtcacca ggcggtgcca tgagtcggcc tgtggcagga ccgtcagcct cttctcccca
961 gccttctaca ctgccaagta tggctacaag ttgtgcctgc ggctgtacct gaatggagat
1021 ggcactggaa agagaaccca tctgtcgctc ttcatcgtga tcatgagagg ggagtatgat
1081 gcgctgctgc cgtggccttt ccggaacaag gtcaccttca tgctgctgga ccagaacaac
1141 cgtgagcacg ccattgacgc cttccggcct gacctaagct cagcgtcctt ccagaggccc
1201 cagagtgaaa ccaacgtggc cagtggatgc ccactcttct tccccctcag caaactgcag
1261 tcacccaagc acgcctacgt gaaggacgac acaatgttcc tcaagtgcat tgtggagacc
1321 agcacttagg gtgggcgggg ctcctgaggg agctccaact cagaagggag ctagccagag
1381 gactgtgatg ccctgccctt ggcacccaag acctcagggc acaaagatgg gtgaaggctg
1441 gcatgatcca agcaagactg aggggtcgac ttcgggctgg ccatctggtt aggatggcag
1501 gacgtgggct gggcccacaa aggcaaaggg tccagaagga gacaggcaga gctgctcccc
1561 tctgcacgga ccatgcgaca ctgggaggcc agtgagccac tccggccccg aatgttgagg
1621 tggactctca ccaaatgaga agaaaatgga accaggcttg gaaccgtagg acccaagcag
1681 agaagctctc gggctaggaa gatctctgca gggccgccag ggagacctgg acacaggcct
1741 gctctctttt tctccagggt cagaaacagg accgggtgga agggatgggg tgccagtttg
1801 aatgcagtct gtccaggctc gtcattggag gtgaacaagc aaacccagag ggctccacta
1861 ggacttcaaa ttgggggttg gatttgaaga cttttaagtt tccttccagc ccagaaagtc
1921 tctcattcta ggcctcctgg cccaggtgag tcctagagct acaggggttc tggaaacatt
1981 caggagcttc ctgtcctccc agctcctcac tcaccttcag taacccccac tggactgacc
2041 tggtccacag ggcacctgcc accctgggcc tggcagctca gcttccccaa cacgcaggag
2101 cacacccagc ccccacatcc tgtgcctcca tcagctaaac accacgtcac ttcatgcagg
2161 tgaaacccag tcactgtgag ctcccaggtg cagccagagg cacctcaaga agaagagggg
2221 cataaacttt cctcttcctg cctagaggcc ccacctttgg tgctttccag aatcccgtaa
2281 cacctgatta actgaggcat ccacttcttt cagcagactg atcaggacct ccaagccact
2341 gagcaatgta taaccccaaa gaaataattt ttagaaaaaa aaaaaaaaaa aaaa
//