LOCUS BC023643 1401 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens calpain, small subunit 1, mRNA (cDNA clone MGC:29704 IMAGE:5017512), complete cds. ACCESSION BC023643 VERSION BC023643.2 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1401) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1401) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (05-FEB-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT On Dec 19, 2003 this sequence version replaced BC023643.1. Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: DCTD/DTP cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 39 Row: m Column: 11 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 51599150. FEATURES Location/Qualifiers source 1..1401 /db_xref="H-InvDB:HIT000090833" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:29704 IMAGE:5017512" /tissue_type="Lung, small cell carcinoma" /clone_lib="NIH_MGC_7" /lab_host="DH10B-R" /note="Vector: pOTB7" gene 1..1401 /gene="CAPNS1" /gene_synonym="30K" /gene_synonym="CALPAIN4" /gene_synonym="CANP" /gene_synonym="CANPS" /gene_synonym="CDPS" /db_xref="GeneID:826" /db_xref="HGNC:HGNC:1481" /db_xref="MIM:114170" CDS 38..844 /gene="CAPNS1" /gene_synonym="30K" /gene_synonym="CALPAIN4" /gene_synonym="CANP" /gene_synonym="CANPS" /gene_synonym="CDPS" /codon_start=1 /product="calpain, small subunit 1" /protein_id="AAH23643.1" /db_xref="GeneID:826" /db_xref="HGNC:HGNC:1481" /db_xref="MIM:114170" /translation="MFLVNSFLKGGGGGGGGGGGLGGGLGNVLGGLISGAGGGGGGGG GGGGGGGGGGGGTAMRILGGVISAISEAAAQYNPEPPPPRTHYSNIEANESEEVRQFR RLFAQLAGDDMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTGKLG FEEFKYLWNNIKRWQAIYKQFDTDRSGTICSSELPGAFEAAGFHLNEHLYNMIIRRYS DESGNMDFDNFISCLVRLDAMFRAFKSLDKDGTGQIQVNIQEWLQLTMYS" BASE COUNT 326 a 412 c 389 g 274 t ORIGIN 1 cccagaactc cggacgtgtg cggcgtgagt cgcagccatg ttcctggtta actcgttctt 61 gaagggcggc ggcggcggcg gcgggggagg cgggggcctg ggtgggggcc tgggaaatgt 121 gcttggaggc ctgatcagcg gggccggggg cggcggcggc ggcggcggcg gcggcggcgg 181 tggtggaggc ggcggtggcg gtggaacggc catgcgcatc ctaggcggag tcatcagcgc 241 catcagcgag gcggctgcgc agtacaaccc ggagcccccg cccccacgca cacattactc 301 caacattgag gccaacgaga gtgaggaggt ccggcagttc cggagactct ttgcccagct 361 ggctggagat gacatggagg tcagcgccac agaactcatg aacattctca ataaggttgt 421 gacacgacac cctgatctga agactgatgg ttttggcatt gacacatgtc gcagcatggt 481 ggccgtgatg gatagcgaca ccacaggcaa gctgggcttt gaggaattca agtacttgtg 541 gaacaacatc aaaaggtggc aggccatata caaacagttc gacactgacc gatcagggac 601 catttgcagt agtgaactcc caggtgcctt tgaggcagca gggttccacc tgaatgagca 661 tctctataac atgatcatcc gacgctactc agatgaaagt gggaacatgg attttgacaa 721 cttcatcagc tgcttggtca ggctggacgc catgttccgt gccttcaaat ctcttgacaa 781 agatggcact ggacaaatcc aggtgaacat ccaggagtgg ctgcagctga ctatgtattc 841 ctgaactgga gccccagacc cgccccctca ccgccttgct ataggagtca cctggagcct 901 cggtctctcc cagggccgat cctgtctgca gtcacatctt tgtggggcct gctgacccac 961 aagcttttgt tctctcagta cttgttaccc agcttctcaa catccagggc ccaatttgcc 1021 ctgcctggag ttccccctgg ctctaggaca ctctaacaag ctctgtccac gggtctcccc 1081 attcccacca ggccctgcac acacccactc cgtaacctct cccctgtacc tgtgccaagc 1141 ctagcacttg tgatgcctcc atgccccgag ggccctctct cagttctggg aggatgactc 1201 cagtccctgc acgccctggc acacccttca cggttgctac ccaggcggcc aagctccaga 1261 ccgtgccaga cccaggtgcc ccagtgcctt tgtctatatt ctgctcccag cctgccaggc 1321 ccaggaggaa ataaacatgc cccagttgct gaaaaaaaaa aaaaaaaaaa aaaaaaaaaa 1381 aaaaaaaaaa aaaaaaaaaa a //