LOCUS BC023643 1401 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens calpain, small subunit 1, mRNA (cDNA clone MGC:29704
IMAGE:5017512), complete cds.
ACCESSION BC023643
VERSION BC023643.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1401)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1401)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (05-FEB-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Dec 19, 2003 this sequence version replaced BC023643.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 39 Row: m Column: 11
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 51599150.
FEATURES Location/Qualifiers
source 1..1401
/db_xref="H-InvDB:HIT000090833"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:29704 IMAGE:5017512"
/tissue_type="Lung, small cell carcinoma"
/clone_lib="NIH_MGC_7"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1401
/gene="CAPNS1"
/gene_synonym="30K"
/gene_synonym="CALPAIN4"
/gene_synonym="CANP"
/gene_synonym="CANPS"
/gene_synonym="CDPS"
/db_xref="GeneID:826"
/db_xref="HGNC:HGNC:1481"
/db_xref="MIM:114170"
CDS 38..844
/gene="CAPNS1"
/gene_synonym="30K"
/gene_synonym="CALPAIN4"
/gene_synonym="CANP"
/gene_synonym="CANPS"
/gene_synonym="CDPS"
/codon_start=1
/product="calpain, small subunit 1"
/protein_id="AAH23643.1"
/db_xref="GeneID:826"
/db_xref="HGNC:HGNC:1481"
/db_xref="MIM:114170"
/translation="MFLVNSFLKGGGGGGGGGGGLGGGLGNVLGGLISGAGGGGGGGG
GGGGGGGGGGGGTAMRILGGVISAISEAAAQYNPEPPPPRTHYSNIEANESEEVRQFR
RLFAQLAGDDMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTGKLG
FEEFKYLWNNIKRWQAIYKQFDTDRSGTICSSELPGAFEAAGFHLNEHLYNMIIRRYS
DESGNMDFDNFISCLVRLDAMFRAFKSLDKDGTGQIQVNIQEWLQLTMYS"
BASE COUNT 326 a 412 c 389 g 274 t
ORIGIN
1 cccagaactc cggacgtgtg cggcgtgagt cgcagccatg ttcctggtta actcgttctt
61 gaagggcggc ggcggcggcg gcgggggagg cgggggcctg ggtgggggcc tgggaaatgt
121 gcttggaggc ctgatcagcg gggccggggg cggcggcggc ggcggcggcg gcggcggcgg
181 tggtggaggc ggcggtggcg gtggaacggc catgcgcatc ctaggcggag tcatcagcgc
241 catcagcgag gcggctgcgc agtacaaccc ggagcccccg cccccacgca cacattactc
301 caacattgag gccaacgaga gtgaggaggt ccggcagttc cggagactct ttgcccagct
361 ggctggagat gacatggagg tcagcgccac agaactcatg aacattctca ataaggttgt
421 gacacgacac cctgatctga agactgatgg ttttggcatt gacacatgtc gcagcatggt
481 ggccgtgatg gatagcgaca ccacaggcaa gctgggcttt gaggaattca agtacttgtg
541 gaacaacatc aaaaggtggc aggccatata caaacagttc gacactgacc gatcagggac
601 catttgcagt agtgaactcc caggtgcctt tgaggcagca gggttccacc tgaatgagca
661 tctctataac atgatcatcc gacgctactc agatgaaagt gggaacatgg attttgacaa
721 cttcatcagc tgcttggtca ggctggacgc catgttccgt gccttcaaat ctcttgacaa
781 agatggcact ggacaaatcc aggtgaacat ccaggagtgg ctgcagctga ctatgtattc
841 ctgaactgga gccccagacc cgccccctca ccgccttgct ataggagtca cctggagcct
901 cggtctctcc cagggccgat cctgtctgca gtcacatctt tgtggggcct gctgacccac
961 aagcttttgt tctctcagta cttgttaccc agcttctcaa catccagggc ccaatttgcc
1021 ctgcctggag ttccccctgg ctctaggaca ctctaacaag ctctgtccac gggtctcccc
1081 attcccacca ggccctgcac acacccactc cgtaacctct cccctgtacc tgtgccaagc
1141 ctagcacttg tgatgcctcc atgccccgag ggccctctct cagttctggg aggatgactc
1201 cagtccctgc acgccctggc acacccttca cggttgctac ccaggcggcc aagctccaga
1261 ccgtgccaga cccaggtgcc ccagtgcctt tgtctatatt ctgctcccag cctgccaggc
1321 ccaggaggaa ataaacatgc cccagttgct gaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
1381 aaaaaaaaaa aaaaaaaaaa a
//