LOCUS BC021565 1522 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens sorting nexin 8, mRNA (cDNA clone MGC:31904 IMAGE:4564502), complete cds. ACCESSION BC021565 VERSION BC021565.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1522) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1522) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (14-JAN-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: DCTD/DTP cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Genome Sequence Centre, BC Cancer Agency, Vancouver, BC, Canada info@bcgsc.bc.ca Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 40 Row: e Column: 10 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 23943857. FEATURES Location/Qualifiers source 1..1522 /db_xref="H-InvDB:HIT000039220" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:31904 IMAGE:4564502" /tissue_type="Kidney, renal cell adenocarcinoma" /clone_lib="NIH_MGC_14" /lab_host="DH10B-R" /note="Vector: pOTB7" gene 1..1522 /gene="SNX8" /db_xref="GeneID:29886" /db_xref="HGNC:HGNC:14972" CDS 44..1441 /gene="SNX8" /codon_start=1 /product="sorting nexin 8" /protein_id="AAH21565.1" /db_xref="GeneID:29886" /db_xref="HGNC:HGNC:14972" /translation="MTGRAMDPLPAAAVGAAAEAEADEEADPPASDLPTPQAIEPQAI VQQVPAPSRMQMPQGNPLLLSHTLQELLARDTVQVELIPEKKGLFLKHVEYEVSSQRF KSSVYRRYNDFVVFQEMLLHKFPYRMVPALPPKRMLGADREFIEARRRALKRFVNLVA RHPLFSEDVVLKLFLSFSGSDVQNKLKESAQCVGDEFLNCKLATRAKDFLPADIQAQF AISRELIRNIYNSFHKLRDRAERIASRAIDNAADLLIFGKELSAIGSDTTPLPSWAAL NSSTWGSLKQALKGLSVEFALLADKAAQQGKQEENDVVEKLNLFLDLLQSYKDLCERH EKGVLHKHQRALHKYSLMKRQMMSATAQNREPESVEQLESRIVEQENAIQTMELRNYF SLYCLHQETQLIHVYLPLTSHILRAFVNSQIQGHKEMSKVWNDLRPKLSCLFAGPHST LTPPCSPPEDGLCPH" BASE COUNT 341 a 463 c 460 g 258 t ORIGIN 1 gccgggtggc gcgggaggaa gtcacgtggg agcgcgggct cacatgactg gccgcgcgat 61 ggacccgctg cccgcggctg cagtcggggc ggcagctgag gcggaggctg acgaggaggc 121 ggatcccccg gcgtcagatc tgccgacacc ccaggccatc gagccccagg ccatcgtgca 181 gcaggtccca gcccccagtc gaatgcagat gccgcagggg aacccgctgc tgctgtccca 241 caccctgcag gagctgctgg ccagggacac cgtgcaggtg gagctcattc cggagaagaa 301 gggcctcttc ctgaagcatg tggagtatga ggtttccagc cagcgcttca agtcctcggt 361 atacagacgg tacaatgact tcgtggtctt ccaggagatg ctcctgcaca agttccccta 421 ccgtatggtg cctgccctgc cacccaagag aatgctggga gctgacaggg agttcatcga 481 ggccaggagg agagccctga agcgcttcgt caacctggtg gcgcgacacc ccctgttctc 541 cgaggatgtg gtcctcaagc tcttcctgtc cttcagcggc tcggatgtgc agaacaagtt 601 aaaggagtca gcacagtgcg tcggggacga attcctgaac tgtaagctgg ctaccagggc 661 caaggacttc ctcccagctg acatccaggc tcagtttgcc atcagccggg agctgatccg 721 gaacatctac aatagctttc acaagcttcg cgacagggcc gagcggatcg cgtcgcgggc 781 catcgacaat gcggcagatc ttctcatatt cgggaaggag ctaagtgcaa tagggtctga 841 cacgaccccg ctgccctcct gggccgctct gaatagcagc acgtgggggt ccctgaagca 901 ggctctgaaa ggcctgtctg tggaattcgc gctgctcgcc gacaaggctg cacaacaggg 961 taagcaggaa gagaacgacg tggtggagaa gctgaacctc ttcttggatc tgctgcagtc 1021 ctataaggac ctgtgcgagc ggcatgagaa gggcgtgttg cacaagcacc agcgggccct 1081 gcacaagtac agcctgatga agaggcagat gatgagcgcc accgcgcaga accgcgagcc 1141 ggagtccgtg gagcagctgg agtcccgcat cgtggagcag gagaacgcga ttcagacgat 1201 ggagctgcgg aactacttct ccctgtactg cctgcaccag gagacgcagc tcatccacgt 1261 ctacctgccc ctcacctccc acatcctccg cgccttcgtc aactctcaga tccaagggca 1321 caaggagatg agcaaggtgt ggaacgacct gaggcccaag ctcagctgcc tctttgcggg 1381 accacacagc accctgaccc caccgtgctc cccgccggag gacggcctgt gtcctcacta 1441 gcgcctgagg ctgaggtggt gctccctgcg gccgcactaa aacctctttc caaaaaaaaa 1501 aaaaaaaaaa aaaaaaaaaa aa //