LOCUS BC021565 1522 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens sorting nexin 8, mRNA (cDNA clone MGC:31904
IMAGE:4564502), complete cds.
ACCESSION BC021565
VERSION BC021565.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1522)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1522)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (14-JAN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 40 Row: e Column: 10
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 23943857.
FEATURES Location/Qualifiers
source 1..1522
/db_xref="H-InvDB:HIT000039220"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:31904 IMAGE:4564502"
/tissue_type="Kidney, renal cell adenocarcinoma"
/clone_lib="NIH_MGC_14"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1522
/gene="SNX8"
/db_xref="GeneID:29886"
/db_xref="HGNC:HGNC:14972"
CDS 44..1441
/gene="SNX8"
/codon_start=1
/product="sorting nexin 8"
/protein_id="AAH21565.1"
/db_xref="GeneID:29886"
/db_xref="HGNC:HGNC:14972"
/translation="MTGRAMDPLPAAAVGAAAEAEADEEADPPASDLPTPQAIEPQAI
VQQVPAPSRMQMPQGNPLLLSHTLQELLARDTVQVELIPEKKGLFLKHVEYEVSSQRF
KSSVYRRYNDFVVFQEMLLHKFPYRMVPALPPKRMLGADREFIEARRRALKRFVNLVA
RHPLFSEDVVLKLFLSFSGSDVQNKLKESAQCVGDEFLNCKLATRAKDFLPADIQAQF
AISRELIRNIYNSFHKLRDRAERIASRAIDNAADLLIFGKELSAIGSDTTPLPSWAAL
NSSTWGSLKQALKGLSVEFALLADKAAQQGKQEENDVVEKLNLFLDLLQSYKDLCERH
EKGVLHKHQRALHKYSLMKRQMMSATAQNREPESVEQLESRIVEQENAIQTMELRNYF
SLYCLHQETQLIHVYLPLTSHILRAFVNSQIQGHKEMSKVWNDLRPKLSCLFAGPHST
LTPPCSPPEDGLCPH"
BASE COUNT 341 a 463 c 460 g 258 t
ORIGIN
1 gccgggtggc gcgggaggaa gtcacgtggg agcgcgggct cacatgactg gccgcgcgat
61 ggacccgctg cccgcggctg cagtcggggc ggcagctgag gcggaggctg acgaggaggc
121 ggatcccccg gcgtcagatc tgccgacacc ccaggccatc gagccccagg ccatcgtgca
181 gcaggtccca gcccccagtc gaatgcagat gccgcagggg aacccgctgc tgctgtccca
241 caccctgcag gagctgctgg ccagggacac cgtgcaggtg gagctcattc cggagaagaa
301 gggcctcttc ctgaagcatg tggagtatga ggtttccagc cagcgcttca agtcctcggt
361 atacagacgg tacaatgact tcgtggtctt ccaggagatg ctcctgcaca agttccccta
421 ccgtatggtg cctgccctgc cacccaagag aatgctggga gctgacaggg agttcatcga
481 ggccaggagg agagccctga agcgcttcgt caacctggtg gcgcgacacc ccctgttctc
541 cgaggatgtg gtcctcaagc tcttcctgtc cttcagcggc tcggatgtgc agaacaagtt
601 aaaggagtca gcacagtgcg tcggggacga attcctgaac tgtaagctgg ctaccagggc
661 caaggacttc ctcccagctg acatccaggc tcagtttgcc atcagccggg agctgatccg
721 gaacatctac aatagctttc acaagcttcg cgacagggcc gagcggatcg cgtcgcgggc
781 catcgacaat gcggcagatc ttctcatatt cgggaaggag ctaagtgcaa tagggtctga
841 cacgaccccg ctgccctcct gggccgctct gaatagcagc acgtgggggt ccctgaagca
901 ggctctgaaa ggcctgtctg tggaattcgc gctgctcgcc gacaaggctg cacaacaggg
961 taagcaggaa gagaacgacg tggtggagaa gctgaacctc ttcttggatc tgctgcagtc
1021 ctataaggac ctgtgcgagc ggcatgagaa gggcgtgttg cacaagcacc agcgggccct
1081 gcacaagtac agcctgatga agaggcagat gatgagcgcc accgcgcaga accgcgagcc
1141 ggagtccgtg gagcagctgg agtcccgcat cgtggagcag gagaacgcga ttcagacgat
1201 ggagctgcgg aactacttct ccctgtactg cctgcaccag gagacgcagc tcatccacgt
1261 ctacctgccc ctcacctccc acatcctccg cgccttcgtc aactctcaga tccaagggca
1321 caaggagatg agcaaggtgt ggaacgacct gaggcccaag ctcagctgcc tctttgcggg
1381 accacacagc accctgaccc caccgtgctc cccgccggag gacggcctgt gtcctcacta
1441 gcgcctgagg ctgaggtggt gctccctgcg gccgcactaa aacctctttc caaaaaaaaa
1501 aaaaaaaaaa aaaaaaaaaa aa
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