LOCUS BC021180 726 bp mRNA linear HUM 17-JUL-2006 DEFINITION Homo sapiens high-mobility group box 4, mRNA (cDNA clone MGC:33358 IMAGE:5266418), complete cds. ACCESSION BC021180 VERSION BC021180.2 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 726) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 726) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (07-JAN-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT On Aug 25, 2003 this sequence version replaced BC021180.1. Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Miklos Palkovits, M.D., Ph.D. cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki Toshiyuki and Piero Carninci (RIKEN) cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Institute for Systems Biology http://www.systemsbiology.org contact: amadan@systemsbiology.org Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 47 Row: j Column: 1 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 57232747. FEATURES Location/Qualifiers source 1..726 /db_xref="H-InvDB:HIT000039122" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:33358 IMAGE:5266418" /tissue_type="Testis" /clone_lib="NIH_MGC_97" /lab_host="DH10B" /note="Vector: pBluescriptR" gene 1..726 /gene="HMGB4" /gene_synonym="dJ1007G16.5" /gene_synonym="FLJ40388" /db_xref="GeneID:127540" /db_xref="HGNC:HGNC:24954" CDS 114..674 /gene="HMGB4" /gene_synonym="dJ1007G16.5" /gene_synonym="FLJ40388" /codon_start=1 /product="high-mobility group box 4" /protein_id="AAH21180.1" /db_xref="GeneID:127540" /db_xref="HGNC:HGNC:24954" /translation="MGKEIQLKPKANVSSYVHFLLNYRNKFKEQQPSTYVGFKEFSRK CSEKWRSISKHEKAKYEALAKLDKARYQEEMMNYVGKRKKRRKRDPQAPRRPPSSFLL FCQDHYAQLKRENPNWSVVQVAKATGKMWSTATDLEKHPYEQRVALLRAKYFEELELY RKQCNARKKYRMSARNRCRGKRVRQS" BASE COUNT 253 a 160 c 174 g 139 t ORIGIN 1 agtcggaaaa attcgctgca agtacagcac tttctagatt gctcctggag tgtgggaaca 61 acagtctctc ctgtccacgt tactgaatcc agaaaaaagg tgaacttacg aacatgggaa 121 aagaaatcca gctaaagcct aaggcaaatg tctcttctta cgttcacttt ttgctgaatt 181 acagaaacaa attcaaggag cagcagccaa gtacctacgt tggctttaaa gagttctcta 241 gaaagtgttc ggaaaaatgg agatccatct caaagcatga aaaggccaaa tatgaagccc 301 tggccaaact cgacaaagcc cgataccagg aagaaatgat gaattatgtt ggcaagagga 361 agaaacggag aaagcgggat ccccaggcac ccagacggcc tccatcatcc ttcctactct 421 tctgccaaga ccactatgct cagctgaaga gggagaaccc gaactggtcg gtggtgcagg 481 tggccaaggc cacagggaag atgtggtcaa cagcgacaga cctggagaag cacccttatg 541 agcaaagagt ggctctcctg agagctaagt acttcgagga acttgaactc taccgtaaac 601 aatgtaatgc caggaagaag taccgaatgt cagctagaaa ccggtgcaga gggaaaagag 661 tcaggcagag ctgatggatc cagtttgaaa aaacaaaatg ccattcaacc aaaaaaaaaa 721 aaaaaa //