LOCUS BC016934 1617 bp mRNA linear HUM 07-OCT-2003 DEFINITION Homo sapiens superoxide dismutase 2, mitochondrial, mRNA (cDNA clone MGC:21350 IMAGE:4184203), complete cds. ACCESSION BC016934 VERSION BC016934.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1617) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1617) AUTHORS Strausberg,R. TITLE Direct Submission JOURNAL Submitted (05-NOV-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Cancer Genomics Office, National Cancer Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: David N. Louis, M.D. cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 20 Row: e Column: 16 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 10835186. FEATURES Location/Qualifiers source 1..1617 /db_xref="H-InvDB:HIT000037757" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:21350 IMAGE:4184203" /tissue_type="Brain, glioblastoma with EGFR amplification" /clone_lib="NCI_CGAP_Brn64" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..1617 /gene="SOD2" /gene_synonym="IPO-B" /gene_synonym="MNSOD" /db_xref="GeneID:6648" /db_xref="MIM:147460" CDS 65..487 /gene="SOD2" /gene_synonym="IPO-B" /gene_synonym="MNSOD" /codon_start=1 /product="SOD2 protein" /protein_id="AAH16934.1" /db_xref="GeneID:6648" /db_xref="MIM:147460" /translation="MLSRAVCGTSRQLAPALGYLGSRQKHSLPDLPYDYGALEPHINA QIMQLHHSKHHAAYVNNLNVTEEKYQEALAKGRFQAERREAVPGRGDPREPGPIRTGL SVEENSLRICTGSEFSRHDSLSFKHMVYLIVEGVPRWV" misc_feature 134..298 /gene="SOD2" /gene_synonym="IPO-B" /gene_synonym="MNSOD" /note="sodfe; Region: Iron/manganese superoxide dismutases, alpha-hairpin domain. superoxide dismutases (SODs) catalyse the conversion of superoxide radicals to molecular oxygen. Three evolutionarily distinct families of SODs are known, of which the Mn/Fe-binding family is one. In humans, there is a cytoplasmic Cu/Zn SOD, and a mitochondrial Mn/Fe SOD. N-terminal domain is a long alpha antiparallel hairpin. A small fragment of YTRE_LEPBI matches well - sequencing error?" /db_xref="CDD:pfam00081" BASE COUNT 397 a 345 c 430 g 445 t ORIGIN 1 gtggtggctt cggcagcggc ttcagcagat cggcggcatc agcggtagca ccagcactag 61 cagcatgttg agccgggcag tgtgcggcac cagcaggcag ctggctccgg ctttggggta 121 tctgggctcc aggcagaagc acagcctccc cgacctgccc tacgactacg gcgccctgga 181 acctcacatc aacgcgcaga tcatgcagct gcaccacagc aagcaccacg cggcctacgt 241 gaacaacctg aacgtcaccg aggagaagta ccaggaggcg ttggccaagg gtaggttcca 301 ggctgagcgg cgggaggcag tccccggcag aggcgacccc agggagccag gccccatacg 361 gacgggcctc tccgtggagg agaactcgct tcgtatttgt accggttccg agttttccag 421 gcacgatagt ctctctttta aacacatggt ctacctcatt gtagaaggag tgcctcgatg 481 ggtttgaaca cacttctgtc atctcaggga acttggggtc ctgcgaagga gcttgcctta 541 ctgttgtgag ccacattccg ttacacatat tgccagcact ggtgaattgt agggcctgaa 601 aagaaagctc tactgtgtca ctcgtttttt ttgcaaattg aaattgttct tgttgtataa 661 tatgctttgg ggaaatgttt ggtctctcag gtaggtgtgc cagccgtttg caggagggct 721 gagagcgcct gtccactggt ggccagacat catcgggtcc gcaggtgtct ctgagtgtca 781 gggtcacctc ctgatagaag tgggagtggt gtcttactgc caggtcacac tgaaggtggg 841 agacaggagg acactactcc gtgctaggaa ccatggtcct tgtcatcttc ctgagagcaa 901 acggggtcgg gactccagcc taggacttgg agactccctg catccccagc taccctgcag 961 gtgaaacttc actgagccca cttgacttca ggtgggagag gaggaggcac accgttgtgg 1021 tgtgcgttac caaaaaagca gtaacctaac tgtggaacag ttcaggatct ttagacttga 1081 tacttttctt gatttccctt aggggtcaaa gttcacaagg aaaatagccc tttagtggga 1141 aactgaaaca ggcttgtttt tatttactat ttactcatat ttgtaatgca attaaaatat 1201 atgttgttaa cttttttttt tttttctcaa gagctcggtt gataaaacca ggggtatgtg 1261 gactttttga gtctgtgcct tttgggggtg tgtatgggaa tgttatgttt taacattttt 1321 tacaaaatag tattgtcttt ttaatttatt cgttagtggt ttgcacaagg aagataatcg 1381 atagtcatgt tttttagacg ctctgtattg cttggtaagc tacgtagtaa aaaatgttta 1441 cttttcctta aatgttttga atttcggggt tatgaaattt gttgagtaat ttttagacag 1501 tcacatcttg ttgactggag gcatctagtg gaaaaatgca gtatttcagc ctgattgtgt 1561 ttgaagtaaa tgattaaaag aggaggaagt taccacaaaa aaaaaaaaaa aaaaaaa //