LOCUS BC016934 1617 bp mRNA linear HUM 07-OCT-2003
DEFINITION Homo sapiens superoxide dismutase 2, mitochondrial, mRNA (cDNA
clone MGC:21350 IMAGE:4184203), complete cds.
ACCESSION BC016934
VERSION BC016934.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1617)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1617)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (05-NOV-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: David N. Louis, M.D.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 20 Row: e Column: 16
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 10835186.
FEATURES Location/Qualifiers
source 1..1617
/db_xref="H-InvDB:HIT000037757"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:21350 IMAGE:4184203"
/tissue_type="Brain, glioblastoma with EGFR amplification"
/clone_lib="NCI_CGAP_Brn64"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1617
/gene="SOD2"
/gene_synonym="IPO-B"
/gene_synonym="MNSOD"
/db_xref="GeneID:6648"
/db_xref="MIM:147460"
CDS 65..487
/gene="SOD2"
/gene_synonym="IPO-B"
/gene_synonym="MNSOD"
/codon_start=1
/product="SOD2 protein"
/protein_id="AAH16934.1"
/db_xref="GeneID:6648"
/db_xref="MIM:147460"
/translation="MLSRAVCGTSRQLAPALGYLGSRQKHSLPDLPYDYGALEPHINA
QIMQLHHSKHHAAYVNNLNVTEEKYQEALAKGRFQAERREAVPGRGDPREPGPIRTGL
SVEENSLRICTGSEFSRHDSLSFKHMVYLIVEGVPRWV"
misc_feature 134..298
/gene="SOD2"
/gene_synonym="IPO-B"
/gene_synonym="MNSOD"
/note="sodfe; Region: Iron/manganese superoxide
dismutases, alpha-hairpin domain. superoxide dismutases
(SODs) catalyse the conversion of superoxide radicals to
molecular oxygen. Three evolutionarily distinct families
of SODs are known, of which the Mn/Fe-binding family is
one. In humans, there is a cytoplasmic Cu/Zn SOD, and a
mitochondrial Mn/Fe SOD. N-terminal domain is a long alpha
antiparallel hairpin. A small fragment of YTRE_LEPBI
matches well - sequencing error?"
/db_xref="CDD:pfam00081"
BASE COUNT 397 a 345 c 430 g 445 t
ORIGIN
1 gtggtggctt cggcagcggc ttcagcagat cggcggcatc agcggtagca ccagcactag
61 cagcatgttg agccgggcag tgtgcggcac cagcaggcag ctggctccgg ctttggggta
121 tctgggctcc aggcagaagc acagcctccc cgacctgccc tacgactacg gcgccctgga
181 acctcacatc aacgcgcaga tcatgcagct gcaccacagc aagcaccacg cggcctacgt
241 gaacaacctg aacgtcaccg aggagaagta ccaggaggcg ttggccaagg gtaggttcca
301 ggctgagcgg cgggaggcag tccccggcag aggcgacccc agggagccag gccccatacg
361 gacgggcctc tccgtggagg agaactcgct tcgtatttgt accggttccg agttttccag
421 gcacgatagt ctctctttta aacacatggt ctacctcatt gtagaaggag tgcctcgatg
481 ggtttgaaca cacttctgtc atctcaggga acttggggtc ctgcgaagga gcttgcctta
541 ctgttgtgag ccacattccg ttacacatat tgccagcact ggtgaattgt agggcctgaa
601 aagaaagctc tactgtgtca ctcgtttttt ttgcaaattg aaattgttct tgttgtataa
661 tatgctttgg ggaaatgttt ggtctctcag gtaggtgtgc cagccgtttg caggagggct
721 gagagcgcct gtccactggt ggccagacat catcgggtcc gcaggtgtct ctgagtgtca
781 gggtcacctc ctgatagaag tgggagtggt gtcttactgc caggtcacac tgaaggtggg
841 agacaggagg acactactcc gtgctaggaa ccatggtcct tgtcatcttc ctgagagcaa
901 acggggtcgg gactccagcc taggacttgg agactccctg catccccagc taccctgcag
961 gtgaaacttc actgagccca cttgacttca ggtgggagag gaggaggcac accgttgtgg
1021 tgtgcgttac caaaaaagca gtaacctaac tgtggaacag ttcaggatct ttagacttga
1081 tacttttctt gatttccctt aggggtcaaa gttcacaagg aaaatagccc tttagtggga
1141 aactgaaaca ggcttgtttt tatttactat ttactcatat ttgtaatgca attaaaatat
1201 atgttgttaa cttttttttt tttttctcaa gagctcggtt gataaaacca ggggtatgtg
1261 gactttttga gtctgtgcct tttgggggtg tgtatgggaa tgttatgttt taacattttt
1321 tacaaaatag tattgtcttt ttaatttatt cgttagtggt ttgcacaagg aagataatcg
1381 atagtcatgt tttttagacg ctctgtattg cttggtaagc tacgtagtaa aaaatgttta
1441 cttttcctta aatgttttga atttcggggt tatgaaattt gttgagtaat ttttagacag
1501 tcacatcttg ttgactggag gcatctagtg gaaaaatgca gtatttcagc ctgattgtgt
1561 ttgaagtaaa tgattaaaag aggaggaagt taccacaaaa aaaaaaaaaa aaaaaaa
//