LOCUS BC014993 2682 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens Hermansky-Pudlak syndrome 6, mRNA (cDNA clone MGC:23252 IMAGE:4869397), complete cds. ACCESSION BC014993 VERSION BC014993.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2682) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2682) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (01-OCT-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC/DCTD/DTP cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Genome Sequence Centre, BC Cancer Agency, Vancouver, BC, Canada info@bcgsc.bc.ca Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 34 Row: l Column: 19 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 31881784. FEATURES Location/Qualifiers source 1..2682 /db_xref="H-InvDB:HIT000088528" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:23252 IMAGE:4869397" /tissue_type="Skin, melanotic melanoma, high MDR." /clone_lib="NIH_MGC_49" /lab_host="DH10B-R" /note="Vector: pOTB7" gene 1..2682 /gene="HPS6" /gene_synonym="FLJ22501" /gene_synonym="MGC20522" /gene_synonym="RP11-302K17.1" /db_xref="GeneID:79803" /db_xref="HGNC:HGNC:18817" /db_xref="MIM:607522" CDS 86..2413 /gene="HPS6" /gene_synonym="FLJ22501" /gene_synonym="MGC20522" /gene_synonym="RP11-302K17.1" /codon_start=1 /product="Hermansky-Pudlak syndrome 6" /protein_id="AAH14993.2" /db_xref="GeneID:79803" /db_xref="HGNC:HGNC:18817" /db_xref="MIM:607522" /translation="MKRSGTLRLLSDLSAFGGAARLRELVAGDSAVRVRGSPDGRHLL LLRPPGAVAPQLLVASRGPGAELERAWPAGQPSPLDAFFLPWPARPALVLVWESGLAE VWGAGVGPGWRPLQSTELCPGGGARVVAVAALRGRLVWCEERQARAEGPSGSPAAAFS HCVCVRTLEPSGEASTSLGRTHVLLHHCPAFGLLASCRQLFLVPTATTWPGVAHVLLI WSPGKGKVMVAAPRLGLSYSKSLNPGRGDTWDFRTLLRGLPGLLSPREPLAVHTWAPT PQGLLLLDFGGTVSLLQSHGGTRAVGTLQEAPVGPWGSAALGTFQGTLACVLGSTLEL LDMGSGQLLERKVLSTDRVHLLEPPAPGMEDEEELETRGNLRLLSALGLFCVGWEAPQ GVELPSAKDLVFEEACGYYQRRSLRGAQLTPEELRHSSTFRAPQALASILQGHLPPSA LLTMLRTELRDYRGLEQLKAQLVAGDDEEAGWTELAEQEVARLLRTELIGDQLAQLNT VFQALPTAAWGATLRALQLQLDGNGKLRSQAPPDVWKKVLGGITAGKEPPNGILPPFE LLCQCLCQLEPRWLPPFVELAQQQGGPGWGAGGPGLPLYRRALAVLGEEGTRPEALEL ELLLSSGRPKAVLQAVGQLVQKEQWDRALDAGLALGPSSPLLRSEIFKLLLAEFAQHR RLDAHLPLLCRLCPPELAPAELLLLLRTYLPDEVGPPTPFPEPGAEPPLTVGLLKALL EQTGAQGWLSGPVLSPYEDILWDPSTPPPTPPRDL" BASE COUNT 477 a 819 c 882 g 504 t ORIGIN 1 gctccgctcc cccgagaatc gggcctcgcc ctgctgggcg gctggacctg ggcaaagcct 61 gggcgcgctc ccgcgcagcg gcgccatgaa gcgctcgggg actctgcggc tgctctcgga 121 cctgagcgcc ttcggcggcg cggcgcggct ccgggagctg gtggccgggg actcagcggt 181 ccgagtccgt ggcagtccgg acggccgcca cttgctgctc ctgcgacccc ctggggcggt 241 agccccacag ctgctagtcg cgtcgcgagg gcccggcgcg gagctagagc gggcctggcc 301 ggccggccag ccctccccgc tggacgcctt cttcctgccg tggccagcgc ggccggcgct 361 ggtgctggtg tgggagagtg gcctggccga ggtgtggggc gcgggcgtgg ggcctggctg 421 gcggccgctg cagagcaccg agctgtgtcc gggcggggga gcccgcgttg tggcagtggc 481 ggcgctccga ggccgcctgg tgtggtgcga ggagcggcag gcccgggccg agggcccgtc 541 agggtcgcca gcagccgctt tcagccactg tgtgtgcgtc cggactctgg agcccagcgg 601 ggaagctagc accagcctgg gccgcacaca cgtcctgctg caccactgcc ctgccttcgg 661 gctgctggcc tcctgcagac aactcttcct ggtgcccact gccaccacct ggcctggcgt 721 ggcccacgtt ctactcatct ggagcccagg caagggcaaa gtgatggtgg ctgccccacg 781 gcttggtctc tcctacagta agagtctgaa tcctggacga ggggacacat gggacttccg 841 gaccctgctc cgaggccttc ctgggttgct gtcccccagg gagccactgg ctgtacacac 901 ctgggcccca actccccagg gcctgctgtt gcttgacttc gggggcactg tgagcctatt 961 gcagtcccac ggtggtacgc gggctgtggg caccctgcag gaggcacctg taggcccgtg 1021 ggggtctgca gccctaggca catttcaggg cactctggcc tgtgtgctgg gctccacatt 1081 ggaactgctg gacatgggca gtgggcagct gctggagagg aaggtcctaa gtacagacag 1141 ggtacatctg ctagaaccgc cagcccccgg catggaggat gaggaagagc tggagacccg 1201 agggaatctt cgtctgcttt cagccttggg tctgttttgt gtgggctggg aagccccaca 1261 gggtgttgag ttgccttcag ccaaggatct ggtgtttgag gaggcctgcg ggtactacca 1321 gcggcggagc ctgcggggtg cccagctcac tccagaagaa ctgagacaca gcagcacatt 1381 ccgggcacct caggctctgg cctccatcct ccagggccac ctgcccccat ctgcactgct 1441 gaccatgttg aggaccgagc ttcgggatta ccgaggctta gaacagctga aggcccagct 1501 ggtggctggg gatgatgagg aggctggttg gactgagctg gcggagcagg aagtggcacg 1561 cctgctgagg actgagttga taggagacca gctagcccag ctcaacaccg ttttccaagc 1621 ccttcctaca gcagcctggg gtgccaccct cagggccctg cagctccagc tagatgggaa 1681 tggcaagctg aggtcccaag caccccctga tgtgtggaag aaagtgttag ggggaataac 1741 cgctggaaag gaacccccca atggaatact gccccccttt gaactcctgt gccagtgtct 1801 gtgccagctg gagcctcgat ggctgccacc ctttgtggag ctggcacaac agcagggcgg 1861 gccgggctgg ggggcagggg gcccaggact gcccctgtat cgccgagctc tggcagtgct 1921 aggtgaggag gggaccaggc ctgaggctct ggagctagag ctgctcttga gcagtgggcg 1981 gcctaaagct gtgctccaag ctgtcgggca gctggtgcaa aaggaacaat gggatcgggc 2041 tctggatgct ggcctggccc tcggcccctc cagtcccctg cttcgaagtg aaatcttcaa 2101 actgctgctg gccgagtttg cccagcaccg ccggcttgat gctcacctcc ccctcctttg 2161 ccgcctgtgc ccaccagaac tggctccagc tgagctcctg cttctactga ggacatacct 2221 cccagatgag gtggggcccc caaccccatt ccctgagcct ggagcagagc cccctctcac 2281 tgtgggcttg ctcaaagccc tgctggagca gactggggct caaggatggc tgtcgggccc 2341 agttctaagc ccatatgagg acatcctatg ggaccccagc actccacccc cgactccacc 2401 tcgggaccta tgactaccct tcaggcatca gaacactcag ggcctggagg cttgcttggg 2461 actggaggct tgcttggaca gttcctctgt gtcactgaca caggaaatca tttctaggac 2521 acagtgatca gggaagggtg cctgggactt ggagggtccc atgtatggac ctgtgtatgc 2581 aatactgttc ggtcatctgg agctattttt aagatgtgtg tgttaaatat atacatagtt 2641 taatatataa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aa //