LOCUS BC014993 2682 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens Hermansky-Pudlak syndrome 6, mRNA (cDNA clone
MGC:23252 IMAGE:4869397), complete cds.
ACCESSION BC014993
VERSION BC014993.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2682)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2682)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-OCT-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 34 Row: l Column: 19
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 31881784.
FEATURES Location/Qualifiers
source 1..2682
/db_xref="H-InvDB:HIT000088528"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:23252 IMAGE:4869397"
/tissue_type="Skin, melanotic melanoma, high MDR."
/clone_lib="NIH_MGC_49"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2682
/gene="HPS6"
/gene_synonym="FLJ22501"
/gene_synonym="MGC20522"
/gene_synonym="RP11-302K17.1"
/db_xref="GeneID:79803"
/db_xref="HGNC:HGNC:18817"
/db_xref="MIM:607522"
CDS 86..2413
/gene="HPS6"
/gene_synonym="FLJ22501"
/gene_synonym="MGC20522"
/gene_synonym="RP11-302K17.1"
/codon_start=1
/product="Hermansky-Pudlak syndrome 6"
/protein_id="AAH14993.2"
/db_xref="GeneID:79803"
/db_xref="HGNC:HGNC:18817"
/db_xref="MIM:607522"
/translation="MKRSGTLRLLSDLSAFGGAARLRELVAGDSAVRVRGSPDGRHLL
LLRPPGAVAPQLLVASRGPGAELERAWPAGQPSPLDAFFLPWPARPALVLVWESGLAE
VWGAGVGPGWRPLQSTELCPGGGARVVAVAALRGRLVWCEERQARAEGPSGSPAAAFS
HCVCVRTLEPSGEASTSLGRTHVLLHHCPAFGLLASCRQLFLVPTATTWPGVAHVLLI
WSPGKGKVMVAAPRLGLSYSKSLNPGRGDTWDFRTLLRGLPGLLSPREPLAVHTWAPT
PQGLLLLDFGGTVSLLQSHGGTRAVGTLQEAPVGPWGSAALGTFQGTLACVLGSTLEL
LDMGSGQLLERKVLSTDRVHLLEPPAPGMEDEEELETRGNLRLLSALGLFCVGWEAPQ
GVELPSAKDLVFEEACGYYQRRSLRGAQLTPEELRHSSTFRAPQALASILQGHLPPSA
LLTMLRTELRDYRGLEQLKAQLVAGDDEEAGWTELAEQEVARLLRTELIGDQLAQLNT
VFQALPTAAWGATLRALQLQLDGNGKLRSQAPPDVWKKVLGGITAGKEPPNGILPPFE
LLCQCLCQLEPRWLPPFVELAQQQGGPGWGAGGPGLPLYRRALAVLGEEGTRPEALEL
ELLLSSGRPKAVLQAVGQLVQKEQWDRALDAGLALGPSSPLLRSEIFKLLLAEFAQHR
RLDAHLPLLCRLCPPELAPAELLLLLRTYLPDEVGPPTPFPEPGAEPPLTVGLLKALL
EQTGAQGWLSGPVLSPYEDILWDPSTPPPTPPRDL"
BASE COUNT 477 a 819 c 882 g 504 t
ORIGIN
1 gctccgctcc cccgagaatc gggcctcgcc ctgctgggcg gctggacctg ggcaaagcct
61 gggcgcgctc ccgcgcagcg gcgccatgaa gcgctcgggg actctgcggc tgctctcgga
121 cctgagcgcc ttcggcggcg cggcgcggct ccgggagctg gtggccgggg actcagcggt
181 ccgagtccgt ggcagtccgg acggccgcca cttgctgctc ctgcgacccc ctggggcggt
241 agccccacag ctgctagtcg cgtcgcgagg gcccggcgcg gagctagagc gggcctggcc
301 ggccggccag ccctccccgc tggacgcctt cttcctgccg tggccagcgc ggccggcgct
361 ggtgctggtg tgggagagtg gcctggccga ggtgtggggc gcgggcgtgg ggcctggctg
421 gcggccgctg cagagcaccg agctgtgtcc gggcggggga gcccgcgttg tggcagtggc
481 ggcgctccga ggccgcctgg tgtggtgcga ggagcggcag gcccgggccg agggcccgtc
541 agggtcgcca gcagccgctt tcagccactg tgtgtgcgtc cggactctgg agcccagcgg
601 ggaagctagc accagcctgg gccgcacaca cgtcctgctg caccactgcc ctgccttcgg
661 gctgctggcc tcctgcagac aactcttcct ggtgcccact gccaccacct ggcctggcgt
721 ggcccacgtt ctactcatct ggagcccagg caagggcaaa gtgatggtgg ctgccccacg
781 gcttggtctc tcctacagta agagtctgaa tcctggacga ggggacacat gggacttccg
841 gaccctgctc cgaggccttc ctgggttgct gtcccccagg gagccactgg ctgtacacac
901 ctgggcccca actccccagg gcctgctgtt gcttgacttc gggggcactg tgagcctatt
961 gcagtcccac ggtggtacgc gggctgtggg caccctgcag gaggcacctg taggcccgtg
1021 ggggtctgca gccctaggca catttcaggg cactctggcc tgtgtgctgg gctccacatt
1081 ggaactgctg gacatgggca gtgggcagct gctggagagg aaggtcctaa gtacagacag
1141 ggtacatctg ctagaaccgc cagcccccgg catggaggat gaggaagagc tggagacccg
1201 agggaatctt cgtctgcttt cagccttggg tctgttttgt gtgggctggg aagccccaca
1261 gggtgttgag ttgccttcag ccaaggatct ggtgtttgag gaggcctgcg ggtactacca
1321 gcggcggagc ctgcggggtg cccagctcac tccagaagaa ctgagacaca gcagcacatt
1381 ccgggcacct caggctctgg cctccatcct ccagggccac ctgcccccat ctgcactgct
1441 gaccatgttg aggaccgagc ttcgggatta ccgaggctta gaacagctga aggcccagct
1501 ggtggctggg gatgatgagg aggctggttg gactgagctg gcggagcagg aagtggcacg
1561 cctgctgagg actgagttga taggagacca gctagcccag ctcaacaccg ttttccaagc
1621 ccttcctaca gcagcctggg gtgccaccct cagggccctg cagctccagc tagatgggaa
1681 tggcaagctg aggtcccaag caccccctga tgtgtggaag aaagtgttag ggggaataac
1741 cgctggaaag gaacccccca atggaatact gccccccttt gaactcctgt gccagtgtct
1801 gtgccagctg gagcctcgat ggctgccacc ctttgtggag ctggcacaac agcagggcgg
1861 gccgggctgg ggggcagggg gcccaggact gcccctgtat cgccgagctc tggcagtgct
1921 aggtgaggag gggaccaggc ctgaggctct ggagctagag ctgctcttga gcagtgggcg
1981 gcctaaagct gtgctccaag ctgtcgggca gctggtgcaa aaggaacaat gggatcgggc
2041 tctggatgct ggcctggccc tcggcccctc cagtcccctg cttcgaagtg aaatcttcaa
2101 actgctgctg gccgagtttg cccagcaccg ccggcttgat gctcacctcc ccctcctttg
2161 ccgcctgtgc ccaccagaac tggctccagc tgagctcctg cttctactga ggacatacct
2221 cccagatgag gtggggcccc caaccccatt ccctgagcct ggagcagagc cccctctcac
2281 tgtgggcttg ctcaaagccc tgctggagca gactggggct caaggatggc tgtcgggccc
2341 agttctaagc ccatatgagg acatcctatg ggaccccagc actccacccc cgactccacc
2401 tcgggaccta tgactaccct tcaggcatca gaacactcag ggcctggagg cttgcttggg
2461 actggaggct tgcttggaca gttcctctgt gtcactgaca caggaaatca tttctaggac
2521 acagtgatca gggaagggtg cctgggactt ggagggtccc atgtatggac ctgtgtatgc
2581 aatactgttc ggtcatctgg agctattttt aagatgtgtg tgttaaatat atacatagtt
2641 taatatataa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aa
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