LOCUS BC013682 1160 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens homeobox A5, mRNA (cDNA clone MGC:9376 IMAGE:3863578), complete cds. ACCESSION BC013682 VERSION BC013682.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1160) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1160) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (04-SEP-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: DCTD/DTP cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Baylor College of Medicine Human Genome Sequencing Center Center code: BCM-HGSC Web site: http://www.hgsc.bcm.tmc.edu/cdna/ Contact: amg@bcm.tmc.edu Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H., Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati, A.N., Gibbs, R.A. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 21 Row: i Column: 9 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 24497516. FEATURES Location/Qualifiers source 1..1160 /db_xref="H-InvDB:HIT000036322" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:9376 IMAGE:3863578" /tissue_type="Ovary, adenocarcinoma" /clone_lib="NIH_MGC_66" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..1160 /gene="HOXA5" /gene_synonym="HOX1.3" /gene_synonym="MGC9376" /db_xref="GeneID:3202" /db_xref="HGNC:HGNC:5106" /db_xref="MIM:142952" CDS 49..861 /gene="HOXA5" /gene_synonym="HOX1.3" /gene_synonym="MGC9376" /codon_start=1 /product="homeobox A5" /protein_id="AAH13682.1" /db_xref="GeneID:3202" /db_xref="HGNC:HGNC:5106" /db_xref="MIM:142952" /translation="MSSYFVNSFCGRYPNGPDYQLHNYGDHSSVSEQFRDSASMHSGR YGYGYNGMDLSVGRSGSGHFGSGERARSYAASASAAPAEPRYSQPATSTHSPQPDPLP CSAVAPSPGSDSHHGGKNSLSNSSGASADAGSTHISSREGVGTASGAEEDAPASSEQA SAQSEPSPAPPAQPQIYPWMRKLHISHDNIGGPEGKRARTAYTRYQTLELEKEFHFNR YLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNKLKSMSMAAAGGAFRP" BASE COUNT 296 a 338 c 299 g 227 t ORIGIN 1 gcacaaacga ccgcgagcca caaatcaagc acacatatca aaaaacaaat gagctcttat 61 tttgtaaact cattttgcgg tcgctatcca aatggcccgg actaccagtt gcataattat 121 ggagatcata gttccgtgag cgagcaattc agggactcgg cgagcatgca ctccggcagg 181 tacggctacg gctacaatgg catggatctc agcgtcggcc gctcgggctc cggccacttt 241 ggctccggag agcgcgcccg cagctacgct gccagcgcca gcgcggcgcc cgccgagccc 301 aggtacagcc agccggccac gtccacgcac tctcctcagc ccgatccgct gccctgctcc 361 gccgtggccc cctcgcccgg cagcgacagc caccacggcg ggaaaaactc cctaagcaac 421 tccagcggcg cctcggccga cgccggcagc acccacatca gcagcagaga gggggttggc 481 acggcgtccg gagccgagga ggacgcccct gccagcagcg agcaggcgag tgcgcagagc 541 gagccgagcc cggcgccgcc cgcccaaccc cagatctacc cctggatgcg caagctgcac 601 ataagtcatg acaacatagg cggcccggaa ggcaaaaggg cccggacggc ctacacgcgc 661 taccagaccc tggagctgga gaaggagttc cacttcaacc gttacctgac ccgcagaagg 721 aggattgaaa tagcacatgc tctttgcctc tccgagagac aaattaaaat ctggttccaa 781 aaccggagaa tgaagtggaa aaaagataat aagctgaaaa gcatgagcat ggccgcggca 841 ggaggggcct tccgtccctg agtatctgag cgtttaaagt actgagcagt attagcggat 901 cccgcgtagt gtcagtacta aggtgacttt ctgaaactcc cttgtgttcc ttctgtgaag 961 aagccctgtt ctcgttgccc taattcatct tttaatcatg agcctgttta ttgccattat 1021 agcgcctgta taagtagatc tgctttctgt tcatctcttt gtcctgaatg gctttgtctt 1081 gaaaaaaaat agatgtttta acttatttat atgaagcaag ctgtgttact tgaagtaact 1141 ataacaaaaa aaaaaaaaaa //